|
Name : lysS (LHK_02425) Accession : YP_002796416.1 Strain : Laribacter hongkongensis HLHK9 Genome accession: NC_012559 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 2316555 - 2318066 bp Length : 1512 bp Strand : + Note : Lysyl-tRNA synthetase; class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, L DNA sequence : ATGTCCGAACAAGACATCACGAGCCAGCCCGCGCAGGATGAAAACCAGATCATGGCCGAGCGTCGCCAGAAGCTCACCGA GATCCGGACCAGCAAAGGCATCGCCTTCCCCAACGATTTCCGCCGCCAGCACTTGGCTGCCCCGCTGCACGCACAGTACG ATGCCACCGACAAGGAAGCGCTCGAAGCCCAGCCGGTCGAAGTCGTCGTCGCCGGCCGCATGATGCTCAAGCGTGTGATG GGCAAGGCCAGCTTTGCCACGGTGCAGGACAGCTCGGGCCGCATCCAGTTCTACATCAGCCGCGACAAGGTGGGTGAAGA TGTCTACGCGGACTTCAAGACCTGGGACATGGGTGACATTCTCGGCGCCAAAGGCACCCTGATGAAGACCAAGACCGGCG AACTGTCGGTCGAAGTGAGCGAGCTGCGCCTGCTCTCCAAGTCGCTGCGCCCGCTGCCTGACAAATTCCACGGTCTGGCT GACCAGGAACAGAAATACCGCCAGCGTTACGTTGACCTGATCATCAACCAGGACAGCCGTGACACCTTCATCAAGCGCTC GAAAATCGTACAGACCGTACGCGAAGTCATGGTGGGCGAAGACTACCTCGAAGTCGAAACCCCGATGATGCACCCGATCC CGGGTGGCGCTGCTGCCAAACCGTTCGTCACCCACCACAATGCCCTCGACATGCCGCTCTACCTGCGCATCGCACCGGAG CTGTACCTCAAGCGGCTGGTCGTGGGCGGACTGGAGCGCGTGTTCGAAATCAACCGCAACTTCCGCAACGAGGGGATGAG CACCCGCCACAACCCCGAGTTCACCATGATCGAGTTTTACGAGGCCTACTGCGGCTACGAGCGCATGATGGAGATGACCG AAAAGATCATCCGTCGCTGCGCTGAAGCAGCCTGCGGCACCACCAAGGTGACCTACAACGGCAAGGAAGTCGATCTGGGC AAGCCGTTTGATCGCTTTACCATCGTCGGTGCCATCAAGCACTACAACCCGCAATACACCGACGAACAGCTGGCCGACGA AGCCTGGCTCAAGAGCGAAATCAAGGCGCTGGGCGGCAAGCTGCCCCCGGCTCCGGGCATCGGCAGCCTGCAACTGGCCC TCTTTGAAGAATGCGCCGAAGGCAAGCTGTGGAATCCGACCTTCATCATCGACTACCCGGTTGAAGTCTCGCCGCTGGCA CGCGGCTCGGATGCCGATCCGTCAATCACCGAGCGCTTCGAGCTCTTCATCGTCGGCCGCGAACATGCCAACGGCTATTC GGAGCTTAACGATCCGGAAGACCAGGCTGCCCGCTTCCGCTCGCAAGTCGAGCAAAAGGATGCCGGCGACGATGAGGCCA TGCACTACGACGCCGACTATATCCGTGCCATGGAATACGGTCTGCCCCCGACCGGCGGCTGCGGCATCGGTATTGACCGT CTGGTCATGCTGCTGACCGATGCCCCGTCGATCCGCGATGTCATCCTGTTCCCGCACATGAGGCCTGAATAA Protein sequence : MSEQDITSQPAQDENQIMAERRQKLTEIRTSKGIAFPNDFRRQHLAAPLHAQYDATDKEALEAQPVEVVVAGRMMLKRVM GKASFATVQDSSGRIQFYISRDKVGEDVYADFKTWDMGDILGAKGTLMKTKTGELSVEVSELRLLSKSLRPLPDKFHGLA DQEQKYRQRYVDLIINQDSRDTFIKRSKIVQTVREVMVGEDYLEVETPMMHPIPGGAAAKPFVTHHNALDMPLYLRIAPE LYLKRLVVGGLERVFEINRNFRNEGMSTRHNPEFTMIEFYEAYCGYERMMEMTEKIIRRCAEAACGTTKVTYNGKEVDLG KPFDRFTIVGAIKHYNPQYTDEQLADEAWLKSEIKALGGKLPPAPGIGSLQLALFEECAEGKLWNPTFIIDYPVEVSPLA RGSDADPSITERFELFIVGREHANGYSELNDPEDQAARFRSQVEQKDAGDDEAMHYDADYIRAMEYGLPPTGGCGIGIDR LVMLLTDAPSIRDVILFPHMRPE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-122 | 54 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 2e-76 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002796416.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-122 | 54 |
