Gene Information

Name : fliP (LHK_02351)
Accession : YP_002796342.1
Strain : Laribacter hongkongensis HLHK9
Genome accession: NC_012559
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 2245231 - 2245986 bp
Length : 756 bp
Strand : -
Note : flagellar biosynthetic protein fliP; FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGAAGTCCCGTTTCCTCTTTGCCCTGCCTTGGCTGGCGATGGGCGGACTGCTGGTGGCCGATGCCGCTGCCGCACCGAA
CATCCCGTTCATGAATGCCAGTCCTGCCGGCGGTGCCGGTACGCAGTACTCGCTGTCGCTCGAGATGCTGCTGTTCCTGA
CCAGTCTGACCTTCATTCCGGCTCTGCTGCTGATGATGACGGCGTTTACCCGCATCGTGATCGTGCTGTCGCTGTTGCGG
CAGGCGATCGGCCTGATGCAGTCGCCACCCAACCAGGTGATTGTCGGTCTGTCACTGTTCCTGACCCTGTTTGTCATGGC
GCCGGTGTTCGACCAGGCCTACCGAGAAGCCTGGCTGCCGTATTCCGACAGCCAGATGAATTTCATGCAGGCGGCTGAAA
AAGGCGTCCAGCCGTTCAAGGGCTTCATGCTGAAACAGACGCGGGAAAAGGACTTGGCTTTTTTTGTCGAGATTGCCCGC
GAAGCGCCTCCGGCCACTCCGGCAGACGTCAGCCTGAAAACCCTGATTCCGGCCTTCGTGGTCAGTGAGCTGAAAACCGC
GTTCCAGATCGGATTCATGGTGTTCATTCCGTTCCTGATCATTGACCTGGTGGTGGCCAGCGTGCTGATGGCCATGGGCA
TGATGATGGTGTCGCCGGTGATCATTTCGCTGCCGTTCAAGCTGATGCTGTTTGTGCTGGTGGACGGCTGGACGTTGCTG
ATCGGTTCGCTGGTCCAGAGTTTTTACCTGACATGA

Protein sequence : 
MKSRFLFALPWLAMGGLLVADAAAAPNIPFMNASPAGGAGTQYSLSLEMLLFLTSLTFIPALLLMMTAFTRIVIVLSLLR
QAIGLMQSPPNQVIVGLSLFLTLFVMAPVFDQAYREAWLPYSDSQMNFMQAAEKGVQPFKGFMLKQTREKDLAFFVEIAR
EAPPATPADVSLKTLIPAFVVSELKTAFQIGFMVFIPFLIIDLVVASVLMAMGMMMVSPVIISLPFKLMLFVLVDGWTLL
IGSLVQSFYLT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 7e-35 46
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 7e-35 46
lscR AAO18040.1 LscR Virulence TTSS locus Protein 3e-35 46
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 5e-35 45
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 6e-35 45
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 8e-35 45
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 8e-35 45
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 5e-34 44
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 4e-33 44
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 4e-34 44
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-29 43
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-29 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-29 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 3e-21 43
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 3e-21 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 4e-30 43
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 6e-22 43
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 1e-23 42
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 1e-23 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 1e-29 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 7e-22 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 1e-33 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 1e-33 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 3e-34 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 3e-34 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-34 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-33 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-33 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_002796342.1 flagellar biosynthesis protein FliP VFG2494 Protein 2e-65 67
fliP YP_002796342.1 flagellar biosynthesis protein FliP VFG2338 Protein 4e-59 66
fliP YP_002796342.1 flagellar biosynthesis protein FliP VFG1259 Protein 1e-57 58
fliP YP_002796342.1 flagellar biosynthesis protein FliP VFG2016 Protein 1e-53 53
fliP YP_002796342.1 flagellar biosynthesis protein FliP VFG0188 Protein 2e-36 45
fliP YP_002796342.1 flagellar biosynthesis protein FliP VFG0044 Protein 2e-35 44
fliP YP_002796342.1 flagellar biosynthesis protein FliP VFG0394 Protein 1e-34 44
fliP YP_002796342.1 flagellar biosynthesis protein FliP VFG0519 Protein 1e-34 42