|
Name : dnaB (LHK_01738) Accession : YP_002795732.1 Strain : Laribacter hongkongensis HLHK9 Genome accession: NC_012559 Putative virulence/resistance : Unknown Product : DnaB Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0305 EC number : 3.6.1.- Position : 1661782 - 1663197 bp Length : 1416 bp Strand : + Note : Replicative DNA helicase DNA sequence : ATGTCCGAATACGATGATCTCCCCGCGCCATCCGATGCCGAGCCCCTGACCGGGCTGCGGGTACCGCCGCATTCTGCCGA GGCAGAACAGTCGGTGCTTGGCGGCCTGCTGCTCGACAATCACGCATGGGAAAAAATCGCCGACCTGATTGGCGAAGGGG ATTTCTATCGCTACGACCACCGCCTGATCTGGCGGGCCATTGCCAAGCTGATCGACGGTGGCCGCCCGGCCGACGTGATT ACCGTATCCGAACGGCTGGAAAGCACCAACGAACTCTCCGAAGTCGGCGGGCTGGCCTACCTCGCCACCCTGGCGCAGAA CACGCCCAGTGCTGCCAACATCCGCCGCTATGGCGAAATCGTGCGCGAACGCTCGGTCATGCGGCAACTGGTGACGGTCG GCACCGAAATCGTCGAATCGGCCTTTCATCCCATGGGCCGCGATGCGGCCCAGCTGCTGGACGAAGCCGAAGGCAAGGTG TTCAAGATCGCTGAAAGCACGGCCAAATCCGAACAGGGCTTTCTGGCCATGCCGGAAATCCTCGCCGAAGTGACGGACAA GATCGATCTTCTCTACAGCCGCGACAACCCGGATGAAGTCACCGGCGTACCCACCGGGTTTATCGATCTGGACGAAAAGA CCTCCGGCCTGCAACCGGGCGACCTGATCATCGTCGCCGGCCGCCCGTCGATGGGCAAAACGGCATTTTCGATGAACCTG GCCGAAAACGTCGCCATCCATACCGGCCTGCCGGTTGCCGTGTTTTCCATGGAAATGCCGGCAGCCCAGCTGGCCACCCG TATGCTGGGTTCGGTCGGCCGCCTGGACCAGCACAAGCTGCGGACCGGCCGCTTCAACGACGACGACTGGGACCGGTTCG GCAAGGCTGTCGGGGTGCTGGCCGAAACCAAGATCCACATTGATGAAACGCCGGGCCTGACCGCACTGGAACTGCGTGCA CGCACCCGCCGGCTGGCCCGCCAGTACGGCGGCAAGCTCGGTCTGGTCGTCATCGACTATTTGCAGCTGATGAGCGGCTC GGCGCATGCCACCCAGCAGAACCGTACGGCAGAAATCTCGGAAATCTCGCGTTCGCTCAAAAGCCTGGCGCGGGAACTCA GCGTCCCGGTCATCGCCCTGTCGCAGCTCAACCGCTCGGTCGAACAGCGCCCCAACAAGCGCCCGATGATGTCCGACCTG CGCGAATCCGGCGCCATCGAGCAGGATGCCGACTTGATCATCTTCATGTACCGCGACGAGTACTACAACCCGGATTCCCC GGACAAGGGACTGGCCGAAGTCATTATCGGCAAGCACCGTAACGGGCCGACCGGCATTGTGCGCCTGACCTTCATGGGCC AGTTCTCGCGCTTTGAAAACGCTGCACCGGGGCAGGGCTGGGCAGCGGCCGAATAG Protein sequence : MSEYDDLPAPSDAEPLTGLRVPPHSAEAEQSVLGGLLLDNHAWEKIADLIGEGDFYRYDHRLIWRAIAKLIDGGRPADVI TVSERLESTNELSEVGGLAYLATLAQNTPSAANIRRYGEIVRERSVMRQLVTVGTEIVESAFHPMGRDAAQLLDEAEGKV FKIAESTAKSEQGFLAMPEILAEVTDKIDLLYSRDNPDEVTGVPTGFIDLDEKTSGLQPGDLIIVAGRPSMGKTAFSMNL AENVAIHTGLPVAVFSMEMPAAQLATRMLGSVGRLDQHKLRTGRFNDDDWDRFGKAVGVLAETKIHIDETPGLTALELRA RTRRLARQYGGKLGLVVIDYLQLMSGSAHATQQNRTAEISEISRSLKSLARELSVPVIALSQLNRSVEQRPNKRPMMSDL RESGAIEQDADLIIFMYRDEYYNPDSPDKGLAEVIIGKHRNGPTGIVRLTFMGQFSRFENAAPGQGWAAAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13456.1 | replicative DNA helicase | Not tested | PAGI-5 | Protein | 3e-93 | 50 |
| dnaB | CAI36044.1 | replicative DNA helicase DnaB | Not tested | PPHGI-1 | Protein | 4e-86 | 48 |
| PMI2640 | YP_002152342.1 | DNA helicase | Not tested | Not named | Protein | 4e-87 | 47 |
| STY4522 | NP_458617.1 | DNA helicase | Not tested | SPI-7 | Protein | 1e-82 | 47 |
| t4227 | NP_807829.1 | DNA helicase | Not tested | SPI-7 | Protein | 1e-82 | 47 |
| dnaB1 | YP_005176258.1 | replicative DNA helicase | Not tested | ICEPmu1 | Protein | 1e-71 | 45 |
| dnaB2 | YP_001007676.1 | putative DNA helicase | Not tested | YAPI | Protein | 6e-83 | 44 |
| api2 | CAF28476.1 | putative DNA binding protein with DNA-dependent ATPase activity | Not tested | YAPI | Protein | 7e-86 | 44 |
| dnaB2 | YP_001402701.1 | replicative DNA helicase | Not tested | YAPI | Protein | 2e-85 | 44 |
