Gene Information

Name : phoB (LHK_00165)
Accession : YP_002794170.1
Strain : Laribacter hongkongensis HLHK9
Genome accession: NC_012559
Putative virulence/resistance : Virulence
Product : PhoB
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 166399 - 167088 bp
Length : 690 bp
Strand : +
Note : Phosphate regulon transcriptional regulatory protein phoB

DNA sequence :
ATGCCCGCCACCATCCTGCTGGTTGAAGACGAGCCCGCCATCCAGGAACTGATTGCCTTCAACCTGGCACAGTCCGGCCA
TCAGGTGTTGCGGGCTGCCAGTGCCGAAGCTGCCCAGACACTGGTCAAGAACGCCTTGCCGGACCTGGTGCTGCTGGACT
GGATGCTGCCGGGACAGAGCGGCATCGAATTCGCCCGCCGGCTGCGCAGCGACGAGCGTACCCGCGAAGTACCGATCATC
ATGCTGACCGCCCGGTCGGACGAGCAGGACAAGATCGCCGGGCTGGAAACCGGCGCTGACGACTACATCACCAAGCCCTT
CAGTCCGCGTGAACTCCAGGCCCGCATCAAGGCGGTATTGCGGCGGCGGGCACCGCAGATGACCGATGACGCGGTCGAGG
TGCAGGGCCTGCGGCTGGATCCGGCCACCCACCGGGTCGCCGCCGGCGGACAACCGCTGGATCTCGGCCCGACCGAATTC
CGCCTGCTGCACTTCTTCATGACCCACCCGGAGCGGGTGCACAGCCGCAGCCAGTTGCTGGACCAGGTCTGGGGCGACCA
CGTATTCGTCGAAGAGCGGACCGTGGACGTGCACATCCGTCGCCTGCGCTCGGCGCTGGAGCCAAGCGGGCATGACGCGC
TGGTGCAGACGGTGCGCGGCACCGGCTACCGCTTTTCGGCACAGGGATAA

Protein sequence :
MPATILLVEDEPAIQELIAFNLAQSGHQVLRAASAEAAQTLVKNALPDLVLLDWMLPGQSGIEFARRLRSDERTREVPII
MLTARSDEQDKIAGLETGADDYITKPFSPRELQARIKAVLRRRAPQMTDDAVEVQGLRLDPATHRVAAGGQPLDLGPTEF
RLLHFFMTHPERVHSRSQLLDQVWGDHVFVEERTVDVHIRRLRSALEPSGHDALVQTVRGTGYRFSAQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 6e-35 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 6e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoB YP_002794170.1 PhoB HE999704.1.gene2815. Protein 8e-41 44
phoB YP_002794170.1 PhoB NC_002952.2859905.p0 Protein 2e-40 42
phoB YP_002794170.1 PhoB NC_007622.3794472.p0 Protein 3e-40 42
phoB YP_002794170.1 PhoB NC_012469.1.7685629. Protein 4e-38 42
phoB YP_002794170.1 PhoB NC_002758.1121390.p0 Protein 7e-38 41
phoB YP_002794170.1 PhoB NC_010079.5776364.p0 Protein 7e-38 41
phoB YP_002794170.1 PhoB NC_002952.2859858.p0 Protein 7e-38 41
phoB YP_002794170.1 PhoB NC_007622.3794948.p0 Protein 7e-38 41
phoB YP_002794170.1 PhoB NC_003923.1003417.p0 Protein 7e-38 41
phoB YP_002794170.1 PhoB NC_013450.8614146.p0 Protein 7e-38 41
phoB YP_002794170.1 PhoB NC_002951.3238224.p0 Protein 7e-38 41
phoB YP_002794170.1 PhoB NC_007793.3914065.p0 Protein 7e-38 41
phoB YP_002794170.1 PhoB NC_012469.1.7686381. Protein 1e-37 41
phoB YP_002794170.1 PhoB NC_003923.1003749.p0 Protein 3e-40 41
phoB YP_002794170.1 PhoB NC_002758.1121668.p0 Protein 3e-40 41
phoB YP_002794170.1 PhoB NC_009641.5332272.p0 Protein 3e-40 41
phoB YP_002794170.1 PhoB NC_013450.8614421.p0 Protein 3e-40 41
phoB YP_002794170.1 PhoB NC_007793.3914279.p0 Protein 3e-40 41
phoB YP_002794170.1 PhoB AE016830.1.gene1681. Protein 3e-40 41
phoB YP_002794170.1 PhoB NC_002745.1124361.p0 Protein 3e-40 41
phoB YP_002794170.1 PhoB NC_009782.5559369.p0 Protein 3e-40 41
phoB YP_002794170.1 PhoB NC_002951.3237708.p0 Protein 3e-40 41
phoB YP_002794170.1 PhoB AE000516.2.gene3505. Protein 2e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoB YP_002794170.1 PhoB VFG1563 Protein 3e-35 41
phoB YP_002794170.1 PhoB VFG1702 Protein 2e-35 41