Gene Information

Name : LHK_01566 (LHK_01566)
Accession : YP_002795563.1
Strain : Laribacter hongkongensis HLHK9
Genome accession: NC_012559
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1513607 - 1514782 bp
Length : 1176 bp
Strand : -
Note : -

DNA sequence : 
ATGCTCTCTGACACCAAAGTTAGACAGGCGAAACCGCAAGAGAAGGTCTATCGCATTGCTGATGCCAGGGGACTGGCTAT
CGAGATTCGCCCGACAGGGCAAAAAATATGGCGTTACCGATTCAGGCTGGACGGGAAAGCCAATATGTTCACCATCGGTG
AATACCCGTCTGTAAGCCTTTCGGAAGCCCGTAAAAAGCTCGAAGAGGCTCGCGAGCTAGTCTTCAAAGGCATTAATCCG
AATACAGCCAAGAAAACGGATATTGCTTCCCGCATCGAGGAGAACGCCAATACCTTCCGGGTAGTTGCTGATGACTGGAT
TCAGACAAACACGCACTGGAGCGACACTTACCGAAAGCAGGTGCGCAAGACTCTGGAAGTGGATATTTTCCCGTGCTTTG
GAGACCTTCCAATCCGGGAAATCAGCTCTGCCCAAGTCTTGGCAATGTTGAATGGCATCATCAAGCGAAATGCGCCACTC
GTCGCACGCAATGCTAGGCAGTGGGCTGGAGCTGTGTTCAGGCATGGCATCACCACGCTGCGTTGTGAAACTGACCCTAC
CCAGCCTTTGAACGGGGTGATAAAGGTCGGGAAAGTAAATCATCATCGACCTCTCAAGCCGGAAACGCTTCCCGGGTTTC
TAAAGGCTCTGTATGCCTACAAAGGGTATGGAATTGCCAAGCCGGCTGCGCAGCTGATGATGCTGACGTTCGTGCGGACA
ATCGAAATCAGGCGTGCCGAATGGTCGGACATTGACCTTGAAAACGGCGTATGGCGTATCCCGCCTGAAAAGATGAAGAT
GCGCACAGAGCATATTGTTCCCCTCTCCCGTCAGTCTATCGCCATTCTTCGCGAACTACAGTCTTTGACGGGGCATCGCC
TCTATGTGTTTCCGAATACACGGCGGCCACATGAAGCCATTACCGCCACAACCATCAATCGGGTTATCGAATACATGGGC
TACAAGGGCATCGTGTCCGGCCATGGATTTCGCTCAACGGCATCCACTATCCTGCATGAGCTCGGGTACCCCGAAAAAGT
CATAGAACTACAGCTTGCGCACATGGAGCGCAACAAGGTAAAGGCTGCATACAACCATGCACAGCACATGGAGGAGCGCA
GAAAGATGATGCAGGACTGGGCAGATTATCTTGATGCACTAAGAATCAAATATTAA

Protein sequence : 
MLSDTKVRQAKPQEKVYRIADARGLAIEIRPTGQKIWRYRFRLDGKANMFTIGEYPSVSLSEARKKLEEARELVFKGINP
NTAKKTDIASRIEENANTFRVVADDWIQTNTHWSDTYRKQVRKTLEVDIFPCFGDLPIREISSAQVLAMLNGIIKRNAPL
VARNARQWAGAVFRHGITTLRCETDPTQPLNGVIKVGKVNHHRPLKPETLPGFLKALYAYKGYGIAKPAAQLMMLTFVRT
IEIRRAEWSDIDLENGVWRIPPEKMKMRTEHIVPLSRQSIAILRELQSLTGHRLYVFPNTRRPHEAITATTINRVIEYMG
YKGIVSGHGFRSTASTILHELGYPEKVIELQLAHMERNKVKAAYNHAQHMEERRKMMQDWADYLDALRIKY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int ACU09430.1 integrase Not tested LEE Protein 5e-76 45
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 7e-76 45
ECs4534 NP_312561.1 integrase Not tested LEE Protein 7e-76 45
int AAC31482.1 CP4-like integrase Not tested LEE Protein 5e-76 45
int CAC39282.1 integrase Not tested LPA Protein 2e-76 44
aec33 AAW51716.1 Int Not tested AGI-3 Protein 2e-76 44
int AAD44730.1 Int Not tested SHI-2 Protein 2e-75 44
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 4e-75 44
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 4e-75 44
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 3e-75 44
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-71 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LHK_01566 YP_002795563.1 integrase VFG0783 Protein 3e-76 45
LHK_01566 YP_002795563.1 integrase VFG0598 Protein 2e-75 44