Gene Information

Name : LHK_01476 (LHK_01476)
Accession : YP_002795474.1
Strain : Laribacter hongkongensis HLHK9
Genome accession: NC_012559
Putative virulence/resistance : Virulence
Product : Molydopterin dinucleotide-binding region
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG0243
EC number : -
Position : 1430348 - 1433452 bp
Length : 3105 bp
Strand : -
Note : -

DNA sequence :
ATGACCGATCGCCGCAATTTCCTTCGCAAGGCCGCCATTGGCGGCGGCCTCACCGCCTTTGCCGCCGGCTTTGCCACCAC
CGGCGTGCGCATGGCCGAACACGCACTGGGACAGGACGCCCCCAACGACCGCCTGCACGGCAATTCGCTCAAGCCGGAGT
TCCGCATCGACCCGGCCAGCGGCCGCCTCGAGCCCGATCCCGGCCAGCAGGTCAGCTATACCGCCTGCCTCGGTTGCACC
ACCCAGTGCGGCGTGCGCGTGCGTATCGACAAGGCCAGCGGCAAGGTGCTGCGCGTGGCCGGCAATCCGTACAGTCCGCT
GTCGACCGACCCACACCTGCCGATGAAAGCGTCGATCCGCGACAGCTTCATCGCACTGTCACGGCAAAACGAAAAAGGCC
TCGCCGGGCGCTCGACCGCCTGCGGTCGTGGCAACGCGGTGCTGAGCCAGATGGATTCGCCGTTCCGGGTGCTGACGCCA
CTCAAGCGCGTCGGCCCGCGCAACAGCGGCCAGTGGCAGCCGATTGCATTCGAACAGCTGGTGAAGGAGCTGACCGAGGG
CGGCGACCTGTTTGGCGAAGGCCATGTCGACGGCCTGCGCGCGCTGCGCAGCTTCGAGCCGATCGACCCGGCTGCCCCGC
AGCTGGGGCCCCGGGTCAACCAGGTGGCGGTATGGAGCAGCGTCAACGACGGGCGCGAGCCTTTCGCCCGCCGTTTCTGG
CAGCAGGCCTACGGCACGCTCAACTTTGTCGGCCACGGCTCGTACTGCGGCGGCGCCTACCGCTCCGGCTCCGGTGCCAT
GTTCGGCGACCTGAAAGCCATGCCGCACGCCAAGCCTGATTTTGCCCACGCCAAATTCGTCATCTTCGTCGGCACGGCGC
CGGGCAATGCCGGCAACCCGTTCAAGCGTCAGGGCACCCTGCTGGCCAAGGCGCGCACCAGCGGCCAGCTGAATTACGTG
GTGGTCGACCCGGTGCTGTCCAACGCCGACAACCTGGCCAGCCGCGAACGTGGCAACTGGATTCCGATCCGCCCCGGCAC
CGACGGCGCACTGGGCATGGCGATGATCCGCTGGATCATCGACGAAAAACGCTACGACGCCGCTTACCTGTCGTACCCGA
ACAAGGCCGTCGCACTGGCCGGTGGCGAACCCTCGTCGAGCAACGCCACCCATCTGGTGATCCGCCAGCCGGAGCATCCC
CGCTTCGGGCGCTTCCTGCGTGCGTCCGACATGGGCTGGATCACGTTCGACAACGAAGAGGAACGCTACGGCGAAACCGA
CGGTTTCGTGGTCCTGCCCGCCGGGCAGACCGTCCCGGTGGCCCATCATGCAGCCACCGGTGCTGCCGAGCTGGAATACA
CCGGCCCGCTGGAAGTGGCCGGCAAACCGCTGCTGGTTGCCACCTCGTTTTCCCTGCTGGCTGAATCGGCCAGACGACAC
GATCTCACGGAGTACAGCGCGGCCTGCGGCATTCCCGAAGCCACCATCGTCGGACTCGCGCGCGAATTCACCTCGCACGG
CAAGCGTGCGGCCGTCAACGCGCACGGCGGCATGATGTCCGGCAGCGGTTTTTACAATGCCTTCAGCCTGATGATGCTCA
ATACGCTGATCGGCAACCTGAACTGGAAAGGCGGCACCCTGCGCAACGGCGGCGGCTTCAAGGAGGACGGCGAAGGCCCG
CGCTACAACCTCGCGGCTTTCCCCGGCCAGACCAAACCGGGCGGCACGCCGCTGGGACGCAACGTGCCGTACGAGAAATC
AGCCGAATTCGCCCGCAGGAAAGCAGCTGGCGAAAAGCCCTACCCCGCCAGCCTGCCGTGGTATCCCAATGCACCGGGGC
TGACCACCCAGTGGCTGCCGGCGGCACTGGCCGGCAACCCCTACCCGCTCAAGGCACTGGTCCTGTGGTCGAGCAACCCG
GTGTACGGCGTGACCGGCTTGCGCGCGCAGGTGGAAAAGGAACTGGCCGACCCGAAAAAGCTGCCGCTGATCGTATCGGT
CGACCCGTTCATCAATGAATCCAACGCCTTTGCCGACTACATCGTGCCGGACTCGCTGATGTACGAATCATGGGGCTGGA
CTGCGCCGTGGGGGGCGGTGCCGACCAAGGCCAGCACCGCACGCTGGCCGGTGGTGGAACCCAGGGCCGACAAGCTGCCG
GACGGCCAGGCGATCGGGCTGGAAACCCTGTCGATTGCTCTGGCCCAGGCCATGGAACTGCCGGGCTTTGGCGAGGCGGC
CATCACCGACACCGACGGCAATACCTACCCGCTCAAGCGACCGGAAGACTGGTACCTGCGTGCCGGCGCCAACGTGGCGT
GGCTGGGCAAGGAGCCGGTAGCCGATGCCAGCGACGACGACCTTGCCCTCTCCGGCCTTGCCCGCCTGCAACCCGTGCTT
GAAAGCACGCTCAAGCCGGAAGAATGGCGCAAGGTAGCGTTCGTACTGGCCCGCGGCGGCCGCTACCAGCCGTACAAGGA
CACCTACGACGAGGAACATCCCGAGTGGGCCACCAACCGCTGGGACAAGCCGATGCAGGTGTACAACGAATCGCTGGGCG
CCTCGCGGGACAGCCAGAGCGGCCAGCGCTTTGCCGGTGTGCCGGTGTGGCAGCCACCGCGTTTTGCCGACGGCACGCCG
GTACGCCAGCACTACGACGAACAGGCATGGCCGTTGCAGCTGATCAGCTTCAAGTCACCGCTGATGAACAGTTACGCCAT
TGCCTCGCCGCGCCTGCGCGGCCTGCACCCCAGCAATCCGGTATCGATGCATGCAAACGATGCGGCGAAACTCGGACTGG
GACACGGTGACCGCATCGTCATCGAAACACCGGGAGGCAAACGCGAAGCCACCGTGCTGGTCCGTCACGGCATCATGCCT
GGCGTGGTGGCCATCGAGCATGGCTACGGCCACCGCGAACTGGGTGCCCGCGCCCACCGAATCGGCAGCCAGCACCAGCC
GAAAGTGGCCGGACTGGATGCCGGGGTCAACCTGAACGACCTTGGCCTGGCTGACCCGACCGTGAACGGCAAATCGGTCT
GGGTCGACCCGGTCAGCGGTACCAGCGTGCGCCAGGGCATTCCGGCCCGGATCAGCAAGGCATGA

Protein sequence :
MTDRRNFLRKAAIGGGLTAFAAGFATTGVRMAEHALGQDAPNDRLHGNSLKPEFRIDPASGRLEPDPGQQVSYTACLGCT
TQCGVRVRIDKASGKVLRVAGNPYSPLSTDPHLPMKASIRDSFIALSRQNEKGLAGRSTACGRGNAVLSQMDSPFRVLTP
LKRVGPRNSGQWQPIAFEQLVKELTEGGDLFGEGHVDGLRALRSFEPIDPAAPQLGPRVNQVAVWSSVNDGREPFARRFW
QQAYGTLNFVGHGSYCGGAYRSGSGAMFGDLKAMPHAKPDFAHAKFVIFVGTAPGNAGNPFKRQGTLLAKARTSGQLNYV
VVDPVLSNADNLASRERGNWIPIRPGTDGALGMAMIRWIIDEKRYDAAYLSYPNKAVALAGGEPSSSNATHLVIRQPEHP
RFGRFLRASDMGWITFDNEEERYGETDGFVVLPAGQTVPVAHHAATGAAELEYTGPLEVAGKPLLVATSFSLLAESARRH
DLTEYSAACGIPEATIVGLAREFTSHGKRAAVNAHGGMMSGSGFYNAFSLMMLNTLIGNLNWKGGTLRNGGGFKEDGEGP
RYNLAAFPGQTKPGGTPLGRNVPYEKSAEFARRKAAGEKPYPASLPWYPNAPGLTTQWLPAALAGNPYPLKALVLWSSNP
VYGVTGLRAQVEKELADPKKLPLIVSVDPFINESNAFADYIVPDSLMYESWGWTAPWGAVPTKASTARWPVVEPRADKLP
DGQAIGLETLSIALAQAMELPGFGEAAITDTDGNTYPLKRPEDWYLRAGANVAWLGKEPVADASDDDLALSGLARLQPVL
ESTLKPEEWRKVAFVLARGGRYQPYKDTYDEEHPEWATNRWDKPMQVYNESLGASRDSQSGQRFAGVPVWQPPRFADGTP
VRQHYDEQAWPLQLISFKSPLMNSYAIASPRLRGLHPSNPVSMHANDAAKLGLGHGDRIVIETPGGKREATVLVRHGIMP
GVVAIEHGYGHRELGARAHRIGSQHQPKVAGLDAGVNLNDLGLADPTVNGKSVWVDPVSGTSVRQGIPARISKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ttrA NP_805054.1 tetrathionate reductase subunit A Virulence SPI-2 Protein 0.0 47
ttrA NP_460348.1 tetrathionate reductase complex subunit A Virulence SPI-2 Protein 0.0 47
ttrA CAB37416.1 tetrathionate reductase subunit A (TtrA) Virulence SPI-2 Protein 0.0 47
ttrA YP_216391.1 tetrathionate reductase complex subunit A Virulence SPI-2 Protein 0.0 47
ttrA NP_456144.1 tetrathionate reductase subunit A Virulence SPI-2 Protein 0.0 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LHK_01476 YP_002795474.1 Molydopterin dinucleotide-binding region VFG0484 Protein 0.0 47