Gene Information

Name : Deide_3p02730 (Deide_3p02730)
Accession : YP_002787742.1
Strain :
Genome accession: NC_012528
Putative virulence/resistance : Virulence
Product : manganese/zinc/iron ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 379331 - 380086 bp
Length : 756 bp
Strand : +
Note : -

DNA sequence : 
GTGACTGCACCTGCTCACCCGGCACCCCTGGCTGTCCGTGACCTTACCGTGGCCTACCGTGAAGCGCCCGTGTTGTGGGA
CATTAACCTGGAGTTCCCTGCCGGGCAGCTCTGCGCGATCGTCGGCCCCAACGGAGCAGGGAAAAGCACCTTTCTCAAGG
CCGTACTGGGCCTCATGCCCAAAGCTTCCGGAAGTATCCGGTTTTTTGGAGCGCCGCTGGCCCAGTCGCGCCGCCGGATC
GGTTACGTGCCGCAACGCACCAGTGTCGACTGGGACTTTCCGACCGACGCCCTGGACGTCGTCACCATGGGTCTGTACGG
CCGGCTTGGCTGGATTCGCAGGCCCGGAAAGCGCGAGCGCGAGCTGGCCATGCAGGCCCTGGACCGCGTCCGGATGACCG
AGTTTGCTGGCCGGCAGATCTCCCAGCTCTCTGGAGGTCAACAGCAACGCGTGTTTCTGGCTCGTGCTCTGGCACAGGAT
GCAGACGTGTACTTTATGGACGAACCGTTTGCTGGCGTGGACGCCACCACCGAGCGGGCCATTCTGGACGTGATGCGCGA
TCTGCAGGAACAAGGCAAGACTGTGGTGGTTGTTCACCACGACCTGGACACTGTCCGGGAGTACTTTGACCATGTCACCC
TGCTGAACGTCAGTCTGGTGGCGAGCGGACCCATCGAGACGACGTTCAGCCCTGAGCTGCTCCGCAAAACCTACGGCGGG
AAGGTCGCCTTCCTTCGGGAGAGCGTGGCCGGATGA

Protein sequence : 
MTAPAHPAPLAVRDLTVAYREAPVLWDINLEFPAGQLCAIVGPNGAGKSTFLKAVLGLMPKASGSIRFFGAPLAQSRRRI
GYVPQRTSVDWDFPTDALDVVTMGLYGRLGWIRRPGKRERELAMQALDRVRMTEFAGRQISQLSGGQQQRVFLARALAQD
ADVYFMDEPFAGVDATTERAILDVMRDLQEQGKTVVVVHHDLDTVREYFDHVTLLNVSLVASGPIETTFSPELLRKTYGG
KVAFLRESVAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 3e-43 44
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 2e-43 44
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-44 44
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-44 44
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 7e-45 44
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 5e-45 44
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-44 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deide_3p02730 YP_002787742.1 manganese/zinc/iron ABC transporter ATP-binding protein BAC0400 Protein 5e-66 60
Deide_3p02730 YP_002787742.1 manganese/zinc/iron ABC transporter ATP-binding protein BAC0350 Protein 3e-45 44
Deide_3p02730 YP_002787742.1 manganese/zinc/iron ABC transporter ATP-binding protein BAC0440 Protein 5e-46 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deide_3p02730 YP_002787742.1 manganese/zinc/iron ABC transporter ATP-binding protein VFG0526 Protein 3e-45 44