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Name : capD (Deide_20260) Accession : YP_002786788.1 Strain : Deinococcus deserti VCD115 Genome accession: NC_012526 Putative virulence/resistance : Virulence Product : capsular polysaccharide biosynthesis protein capD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 2438380 - 2440206 bp Length : 1827 bp Strand : - Note : - DNA sequence : TTGATGAATCTGACCGTCTCCAAATTCCTGCTAGACCTTGTCCTCTGGGGATCGTCGGGAGTACTCGCCTATGCATTTCG CAAGCCGGGCCTGATTACTGCGGGAATTCCAGTTAATGTCTGGAGTTATCTGCTGCTCAGCGTTCTTGTGATGGCGGCGC TTGAGGCCCGCTACGGCCTGCACCGGCAGACCTGGCAGCGAGTCGGCGTGCTAGACCTTAACTTGCTGGCTCGGGCGGTC GCGCTCGCCACACTGGTGATGTTCGCGCTCGGCTTCGTGTTTCAGACCTGGCTGCAACTGCCGCGCAGTGTGCCGGTGTT GGCTGGCCTGCTAGGCTTTTTGATGATGGGTGGAGTTCGGTTGGTCGCTCGACTGACCAATGAGCGAGCTCGGCTTCGGT CCTCCCCTCAGCGCCAGCGGGTCCTGATCGTTGGTGCTGGGGAGGCAGGGACCCTAATCGCCCGTGAGATGCAGCGCCAC CCTGAAGCGGGCCTGGATGCCATCGGCTTTCTGGATGACGAACCGGGCAAGATACGTAAACGGTTGTTGGGGCTGCCGGT GTTTGGGCGAGTAGACGACCTCGTTGATGTCGCCAAGCGTGAGGAAGCGCAGGAGATCCTGATCGCCGTGCCTTCGGCAA CCGGAGACTTTGTGCGTCACGTGGTCGACCTCGCGCGCGACGCGGAGTTGCGGTATCGCATCATTCCTGGTGTCTTTGAG ATTTTGTCAGGAGACGTTAACCTTCAGCAAATTCGAGATGTAAACCTAGAAGACCTTCTTCGACGTCCACCTGTGCAACT CAATACTAACGAGATCGCAGGATACCTGCGTGGCCGGGTGGTGCTGGTCACCGGCGCAGGGGGCAGCATTGGTTCCGAGC TTGTGCGGCAACTGGTCAGCTTTACCCCCGCCAAGATCCTGCTGTTCGGGCGGGGCGAGAACAGCATCTTTGGGATTCAG CAGGAGTTGATTCGCAACTGGCCGGATATCGACCAGGTGGGCCTGATCGGCGACGTCCGTGATGAGGCCCGACTGCGCGC CGTGTTTGAGCGCTATCGCCCTGAAGTCATATTTCATGCAGCGGCCCATAAGCACGTGCCATTGATGGAAGAAACACCCT CTGAAGCCATTCTCAACAACGTCATTGGGACTCAGAACGTGGTGGAACTGTGTCTGGAGTTTGGGGTGGGACGCCTTGTC AATGTATCAACCGACAAGGCAGTCAACCCGACCAGCATCATGGGCGCCTCCAAGCGCGTCGCCGAGATGGTGGTATCTGC TGGAGCCGCCCGCGCCCGCGAGGGCCAAGCTTTCGTGTCGGTGCGCTTCGGCAACGTGTTGGGCAGCCGGGGCAGTGTGG TGCCAACCTTTATGGCTCAGATTCGTGCGGGCGGTCCTATCACCGTGACGCACCCGGAAATGGTGCGCTACTTTATGACC ATACCGGAAGCGGCGCGGCTCGTGCTTCAGGCAGGGGGGCTGGCCGAGAACGGCAAAGTTTACGTGCTGAATATGGGCGA TCCGGTCAAGATCTCGGACCTGGCACATGACGTGATTCGCCTCAGCGGCGCCCGTAACGTGGATGTCGTGTACAGCGGTA TTCGCCCCGGTGAGAAGCTCTATGAGGAACTGCTGACCAGCGGTGAGGGCGTGGGCGCGACCACCCACAGTGAGATTTAC AGCGCGCAGTTGGGACTGGTTAATCCGCATACTATCGGGCGTGACGTTCGGGCGCTGCAAAACTACGCCGAGCAGGGGGA TTATATGGCGATTCGCCAGATGCTGAACCGTTTAATTCCTGAGAACAAGTTCGGGAGGGTGCAGTGA Protein sequence : MMNLTVSKFLLDLVLWGSSGVLAYAFRKPGLITAGIPVNVWSYLLLSVLVMAALEARYGLHRQTWQRVGVLDLNLLARAV ALATLVMFALGFVFQTWLQLPRSVPVLAGLLGFLMMGGVRLVARLTNERARLRSSPQRQRVLIVGAGEAGTLIAREMQRH PEAGLDAIGFLDDEPGKIRKRLLGLPVFGRVDDLVDVAKREEAQEILIAVPSATGDFVRHVVDLARDAELRYRIIPGVFE ILSGDVNLQQIRDVNLEDLLRRPPVQLNTNEIAGYLRGRVVLVTGAGGSIGSELVRQLVSFTPAKILLFGRGENSIFGIQ QELIRNWPDIDQVGLIGDVRDEARLRAVFERYRPEVIFHAAAHKHVPLMEETPSEAILNNVIGTQNVVELCLEFGVGRLV NVSTDKAVNPTSIMGASKRVAEMVVSAGAARAREGQAFVSVRFGNVLGSRGSVVPTFMAQIRAGGPITVTHPEMVRYFMT IPEAARLVLQAGGLAENGKVYVLNMGDPVKISDLAHDVIRLSGARNVDVVYSGIRPGEKLYEELLTSGEGVGATTHSEIY SAQLGLVNPHTIGRDVRALQNYAEQGDYMAIRQMLNRLIPENKFGRVQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 3e-88 | 47 |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 1e-86 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| capD | YP_002786788.1 | capsular polysaccharide biosynthesis protein capD | VFG1300 | Protein | 7e-88 | 44 |
| capD | YP_002786788.1 | capsular polysaccharide biosynthesis protein capD | VFG0029 | Protein | 1e-71 | 44 |
