Gene Information

Name : ROP_70350 (ROP_70350)
Accession : YP_002784227.1
Strain : Rhodococcus opacus B4
Genome accession: NC_012522
Putative virulence/resistance : Virulence
Product : iron-siderophore ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 7689135 - 7689968 bp
Length : 834 bp
Strand : -
Note : -

DNA sequence : 
ATGACCGTGCAGACTGACTCTCGCCTGATCGCCGACAACCTGAGCCTCGGGTACGGCGACCGGATCATCGTCGATCACCT
GAACCTCGAGGTGCGGACCGGGGTGATCACCACCGTGATCGGGCCGAACGGTTGCGGCAAGTCCACGCTGCTGCGCGCGC
TGGGGCGGCTGTTGAAGCCCCGCAACGGTTCGGTACTGCTGGACGGCAAGGCCATCGGGTCGATGCGCACCAAGGACGTC
GCCCGCACGCTCGGCATGCTCCCGCAGGCGCCGGTGGCCCCCGAGGGGCTCACCGTCGCCGATCTGGTGGCCCGCGGACG
GCACCCGCACCAGTCGTGGCTGCGGCAGTGGTCGTCCGACGACGAGGGTGAGGTCGCCGAGGCACTCGCACTGACCGGGG
TGTCCGACCTCGCGGACCGCCCCGTCGACCAGCTGTCGGGCGGCCAGCGTCAGCGGGCATGGATCTCGATGGCCCTCGCG
CAGGGCACCGACATCCTTCTGCTCGACGAGCCCACCACCTACCTGGACCTGGCGCACTCCGTCGAGGTCCTCGACCTGGT
GGACCGGATGCACGAAGAGTTGGGCCGCACCGTGGTGATGGTCCTGCACGACCTGAACCTCGCGATCCGCTACAGCGACC
AGCTGATCGTCATGCGGGACGGCACCATCGTCGCGTCCGGCGCGCCGAAGGACATCATCTCTGCTGAACTGTTGCTCGAG
GTGTTCGGTCTGGAGGCCGCGGTCATCGCCGACCCGGTGTCCGACCGGCCGCTGGTGGTGCCGATCGGCACCCGCCACGT
GTACGGGGCGATCGGCGGACCGGACGCGAAGTAG

Protein sequence : 
MTVQTDSRLIADNLSLGYGDRIIVDHLNLEVRTGVITTVIGPNGCGKSTLLRALGRLLKPRNGSVLLDGKAIGSMRTKDV
ARTLGMLPQAPVAPEGLTVADLVARGRHPHQSWLRQWSSDDEGEVAEALALTGVSDLADRPVDQLSGGQRQRAWISMALA
QGTDILLLDEPTTYLDLAHSVEVLDLVDRMHEELGRTVVMVLHDLNLAIRYSDQLIVMRDGTIVASGAPKDIISAELLLE
VFGLEAAVIADPVSDRPLVVPIGTRHVYGAIGGPDAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-76 59
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-65 48
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-65 48
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-64 47
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 6e-64 47
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 6e-64 47
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-64 47
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 3e-57 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-54 43
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 2e-36 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-53 41
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-53 41
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-53 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-53 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ROP_70350 YP_002784227.1 iron-siderophore ABC transporter ATP-binding protein BAC0164 Protein 2e-57 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ROP_70350 YP_002784227.1 iron-siderophore ABC transporter ATP-binding protein VFG0925 Protein 8e-68 51
ROP_70350 YP_002784227.1 iron-siderophore ABC transporter ATP-binding protein VFG1042 Protein 2e-57 46