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Name : clpC (ROP_49910) Accession : YP_002782183.1 Strain : Rhodococcus opacus B4 Genome accession: NC_012522 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 5393719 - 5396139 bp Length : 2421 bp Strand : + Note : - DNA sequence : ATGCCAGCATTCTTCGGGCCGGAGGGCCCAGGTCGCATCGACATCAGTCGGCTCATGAGTCGCTCCACCCAGGAGCTCAT GGCAGCTGCTGCACGGTTCGCCGCAGGTCGCGGCGATTCGGACCTCGATGCACTCCACGTTCTGCGTGTCATGGCAGAAC ACGACCCCGTCAAATCCCTGATGCAACGCGCAGGCGCCGACACGTCGGCCGTCGCCGATGCCGTCGAACTGCGACTGCCC CAGGGCCGCGACACGTCAGGCTTCGCAACACCCGCCCTGAGCGGTGCGCTCAAGACGGCGCTGCTCGAGGCGCACCAGCT CGCGCGCGCTCTCGGGTCCACCTACATCGATCCCGAGCACCTCTTCCTGGCACTCGCCGCGGATCAGGACCACGCCGCCG GACGCCTGCTCGCCTCCGAGGGCATCACCCCCGAGCGCCTGCAGACGGCGGTGCAAGGCGGGTCGGTGGAGGAGTCCCCG GACTCCGCGACACCCACGCTCGACAAGTACGGCTTCGACCTCACCGAACGTGCGCGCGGCGGCGGAGTCGACCCGGTGAT CGGGCGCGCCGACGAGATCGAGCAGACCATCGAGATCCTCTCGCGCCGCACCAAGAACAACCCCGTGCTGGTCGGTGAGG CCGGCGTCGGCAAGACGGCGGTCGTCGAGGGCCTGGCCCAGCGCATCGTCGACGGCGACGTCCCCGATCGCCTGATCGGC AAGCGCATCGTCCAACTCGACCTGTCGAGCATGGTGTCGGGCACCCGGTACCGCGGTGACTTCGAGGAACGCCTGAACAA CGTGATCGATGAGATCTCGGCTCACTCGGACGAGCTGATCGTCTTCATCGACGAGGTGCACTCCATCGCCGGTGCCGGTG GTGGCGCCGACGGTGCGATGGACGCGGGCAACATCCTCAAGCCGAAGCTCGCCCGAGGTGAGCTGCACATCGTCGGTGCG ACGACGCTCGACGAGTACCGCAAGCACATCGAGAAGGATCCGGCGCTCGAACGGCGCTTCCAGCCGGTGACCGTCGCGGA GCCCAGCATCGAAGACGCGGTGGCGATCCTGTCCGGTCTGCGCGACCGGTACGAGGAGCATCACGGTGTCCGGTACGCCG ACGAGGCGATCACGGCCGCCGTCGAGCTGTCGGCCCGCTACATCGGCGACCGCTTCCTGCCGGACAAGGCGATCGACCTG ATCGATCAGGCCGGCGCCCGGTTGCGGCTGCGGATGCCGAGCGTCGACGTCGAGGCACTGCGGGCGACGCTCGCGGAACT CGAAAAGTCGAAGGAGCAGGCCGTCGCAGACGAGGAGTACGAGAAGGCATCGGCGCTGCGCGACCAGATCGTGGGTGTCC AGGCCCGGATCGACGGCAAGGCCGACGCGTCCGACGTCGCACCCGAGGTAACCGCCGAACAGATCGCCGAGGTCGTGTCG CGGGCCACCGGCATCCCGGCCAGCCAGATGACGGAGGAGGAGAAGGAACGACTCCGCCGGCTCGAGGACGAACTGCACCG TCGGGTCGTCGGCCAGGACGACGCCGTGCGGGCCATCGCCCGGGCGGTGCGCCGCAGCCGCACCGGCATGAACGATCCGG ACCGTCCCGTGGGCAGCTTCCTGTTCCTCGGACCGACCGGCGTCGGGAAGACCGAGCTGGCAAAGGCGCTGGCCGCCACC CTGTTCGGTGACGAGAACAAGATGCTGCGGCTCGACATGAGCGAGTTCGGCGAACGGCACACGGTCAGCCGGCTCGTCGG TGCCCCTCCCGGCTACGTCGGATACGGGGAGGCGGGACAGCTCACCGAGCAGGTCCGCCGCAACCCGTACTCGGTGATCC TGCTCGACGAGATCGAGAAGGCGCACCCCGACGTGTTCAACACGCTCCTGCAGGTGCTCGACGACGGCCGGCTCACGGAC GGTCAGGGCCGGACGGTGGACTTCAAGAACACCGTCCTGATCATGACCAGCAACCTGGGATCCGACATCATCTCCAGCAA GTCGGGTGCGCTGGGCTTCGCCACCGGTGACGCCGAGGCTGCGGAGAAGCCGCTGCGGGATCGGGTGATGGGCCGGCTGC GCGAGTCGATGCGTCCGGAGTTCCTGAACCGGATCGACGAGATCGTGATCTTCCGCAAGCTCGACACCGATCAGCTGCAC CGGATCACCGACCTGCTGCTGGACGACAGCCGGAAGCGGCTGCAGTCCAAGGGCATCGAGATCTCGTTCAGCGACGCCGC GGTCGACTGGATCGCCGAGCACGGGCACCAGCCCGAGTTCGGGGCGCGTCCGCTGCGCCGGTCGATCCAGCGGGCCGTCG ACGACCGGATCGCCGATCTGCTGCTCGACGACGTGCTCGTCGAGGGTGGCAGCGTCGCGGTCGGAGTGTCCGACGACGAG CTGGACCTCGTGGTCGGCTGA Protein sequence : MPAFFGPEGPGRIDISRLMSRSTQELMAAAARFAAGRGDSDLDALHVLRVMAEHDPVKSLMQRAGADTSAVADAVELRLP QGRDTSGFATPALSGALKTALLEAHQLARALGSTYIDPEHLFLALAADQDHAAGRLLASEGITPERLQTAVQGGSVEESP DSATPTLDKYGFDLTERARGGGVDPVIGRADEIEQTIEILSRRTKNNPVLVGEAGVGKTAVVEGLAQRIVDGDVPDRLIG KRIVQLDLSSMVSGTRYRGDFEERLNNVIDEISAHSDELIVFIDEVHSIAGAGGGADGAMDAGNILKPKLARGELHIVGA TTLDEYRKHIEKDPALERRFQPVTVAEPSIEDAVAILSGLRDRYEEHHGVRYADEAITAAVELSARYIGDRFLPDKAIDL IDQAGARLRLRMPSVDVEALRATLAELEKSKEQAVADEEYEKASALRDQIVGVQARIDGKADASDVAPEVTAEQIAEVVS RATGIPASQMTEEEKERLRRLEDELHRRVVGQDDAVRAIARAVRRSRTGMNDPDRPVGSFLFLGPTGVGKTELAKALAAT LFGDENKMLRLDMSEFGERHTVSRLVGAPPGYVGYGEAGQLTEQVRRNPYSVILLDEIEKAHPDVFNTLLQVLDDGRLTD GQGRTVDFKNTVLIMTSNLGSDIISSKSGALGFATGDAEAAEKPLRDRVMGRLRESMRPEFLNRIDEIVIFRKLDTDQLH RITDLLLDDSRKRLQSKGIEISFSDAAVDWIAEHGHQPEFGARPLRRSIQRAVDDRIADLLLDDVLVEGGSVAVGVSDDE LDLVVG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 1e-146 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_002782183.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0079 | Protein | 2e-162 | 52 |
| clpC | YP_002782183.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0080 | Protein | 7e-142 | 51 |
