Gene Information

Name : ROP_45140 (ROP_45140)
Accession : YP_002781706.1
Strain : Rhodococcus opacus B4
Genome accession: NC_012522
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 4867495 - 4868280 bp
Length : 786 bp
Strand : -
Note : -

DNA sequence :
GTGACACTCCACGCAGACGACGTCACGTGGAACCGTGGAGGTGCACTCGTCGTCGACGGTGTCACCGTCACACCGGAACA
GGGTGCGACCGTGGGTCTGCTCGGACCCAACGGATCCGGCAAGTCGTCTCTGCTGCGGCTGCTGAACGGCGTCGTCCGCC
CCACCTCCGGTGTCGTGACACTCGACGGCGACGACCTCACCACCGTGCGTCGCAAGGACATTGCGCGAGCTGTCGCCGTG
GTGAGTCAGCATGCCGACACCGATGTCGACATCAGTGTGCGCGACGTGGTGCGACTCGGACGGATCCCGCACCGCGGGAC
GTTCGGCGGCAACCCGGCCGCCGACGACGCCGCCGTCACCGACGCGCTCGAGCACACCGGTCTCACGGCGAAGGCGGATC
GGCTCTGGCACAGACTGTCCGGCGGCGAGAAACAACGAGTGCAGATCGCCCGTGCCCTGGCTCAACAACCGCGCGAGCTG
CTCCTCGACGAGCCGACCAATCACCTCGACATCCACCACCAACTGGAGTTGCTCTCACTCGTCACGCGGTTGCCGGTCAC
CAGCGTGATCGCCCTGCACGACCTCAACCTCGCCGCCATGTTCTGCGACACCGTCATCGTGCTGAAAGACGGTCGCGTGG
TGGCCGGCGGAACCCCGGCCGAGGTGCTGACGTCGGACCTGATCGCCCAGGTGTACAACGTCCGCGCCGAGGTACTCGTC
GACGAGGTGAAGGGTCGGTTGTCCATCCTGTTCGAGCCGGGACCGGTTCCCGTCCCCGTCCACTGA

Protein sequence :
MTLHADDVTWNRGGALVVDGVTVTPEQGATVGLLGPNGSGKSSLLRLLNGVVRPTSGVVTLDGDDLTTVRRKDIARAVAV
VSQHADTDVDISVRDVVRLGRIPHRGTFGGNPAADDAAVTDALEHTGLTAKADRLWHRLSGGEKQRVQIARALAQQPREL
LLDEPTNHLDIHHQLELLSLVTRLPVTSVIALHDLNLAAMFCDTVIVLKDGRVVAGGTPAEVLTSDLIAQVYNVRAEVLV
DEVKGRLSILFEPGPVPVPVH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 7e-50 48
phuC YP_005686351.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 2e-36 46
phuC YP_005682167.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 1e-36 46
phuC YP_005684259.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 1e-36 46
cpfrc_01918 YP_003784318.1 hypothetical protein Not tested PiCp 7 Protein 1e-36 46
irp6C YP_005124377.1 ATP-binding protein Irp6C Virulence Not named Protein 4e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ROP_45140 YP_002781706.1 ABC transporter ATP-binding protein VFG0925 Protein 7e-36 41