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Name : clpC (ROP_43390) Accession : YP_002781531.1 Strain : Rhodococcus opacus B4 Genome accession: NC_012522 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 4680794 - 4683331 bp Length : 2538 bp Strand : + Note : - DNA sequence : ATGTTCGAGAGGTTCACCGATCGCGCACGGCGCGTTGTTGTCCTGGCTCAAGAAGAAGCCAGGATGCTCAACCACAACTA CATCGGTACGGAGCACATCCTGCTCGGCCTCATTCACGAGGGCGAAGGTGTCGCTGCCAAGTCGCTGGAGTCGTTGGGCA TCTCCCTCGAAGGAGTGCGCAGCCAGGTCGAGGAGATCATCGGCCAGGGCCAGCAGGCCCCGTCCGGCCACATCCCCTTC ACCCCGCGTGCCAAGAAAGTCCTGGAGCTCAGCCTGCGCGAGGCACTGCAGCTCGGACACAACTACATCGGTACGGAGCA CATCCTGCTCGGCCTCATCCGCGAGGGTGAAGGCGTCGCAGCGCAGGTTCTGGTGAAGCTCGGTGCCGACCTCAACCGGG TCCGTCAGCAGGTCATCCAGCTGCTTTCCGGTTACCAGGGCAAGGAGCCTGCCGAGTCCGGCGGCACTCGTGGCGAGGCG GGCACCCCGTCCACGTCGCTGGTGCTCGACCAGTTCGGTCGCAACCTCACCCAGGCGGCCCTCGAAGGCAAGCTCGACCC CGTCATCGGCCGCTCGAAGGAAATCGAGCGCGTCATGCAGGTCCTGTCGCGCCGTACCAAGAACAACCCCGTGCTGATCG GTGAGCCGGGTGTCGGTAAGACCGCCGTCGTCGAAGGTCTCGCTCAGGCCATCGTCAACGGCGAGGTCCCCGAGACGCTC AAGGACAAGCAGCTGTACACGCTCGACCTCGGGTCGCTCGTGGCAGGCAGCCGTTACCGCGGTGACTTCGAAGAGCGCCT GAAGAAGGTCCTCAAGGAGATCAACACCCGCGGCGACATCATCCTGTTCATCGACGAGCTGCACACCCTGGTGGGTGCCG GCGCGGCCGAGGGCGCCATCGATGCGGCCTCGATCCTCAAGCCGAAGCTCGCCCGCGGTGAGCTGCAGACCATCGGTGCG ACCACCCTCGACGAATACCGCAAGTACATCGAGAAGGACGCCGCGCTCGAGCGCCGCTTCCAGCCGGTGCAGGTCGGCGA GCCGACGGTGGAGCACACCATCGAGATCCTCAAGGGTCTGCGCGACCGTTACGAGGCGCACCACCGCGTGTCCATCACGG ACGGTGCACTCGTCGCCGCGGCCACCCTGGCCGACCGCTACATCAACGACCGCTTCCTGCCGGACAAGGCCATCGACCTC ATCGACGAGGCCGGAGCACGGATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTCCGCGAGTTCGACGACAAGATCGC GGACGCCCGCCGCGAGAAGGAGTCCGCGATCGACGCGCAGGACTTCGAGAAGGCCGCGAACCTGCGCGACAAGGAGAAGA CCCTCGTCGCTCAGCGCGCGGAGCGGGAGAAGCAGTGGCGTTCCGGTGACCTGGACGTCATCGCCGAGGTCGACGACGAG CAGATCGCCGAGGTCCTGGGTAACTGGACCGGTATCCCCGTGTTCAAGCTCACCGAGGAGGAGACCACCCGTCTGCTCCG CATGGAGGAGGAGCTGCACAAGCGGATCATCGGTCAGGAAGACGCGGTCAAGGCTGTCGCCAAGGCCATCCGTCGTACCC GCGCCGGCCTGAAGGACCCGAAGCGTCCGTCCGGTTCGTTCATCTTCGCCGGCCCGTCCGGTGTCGGTAAGACCGAGCTG GCCAAGTCGCTCGCCAACTTCTTGTTCGGCGAGGACGACGCCCTCATCCAGATCGACATGGGCGAGTTCCACGACCGCTT CACGGCGTCGCGGCTGTTCGGTGCCCCTCCCGGCTACGTCGGCTACGAAGAGGGCGGCCAGCTCACCGAGAAGGTGCGCC GCAAGCCGTTCAGCGTGGTGCTGTTCGACGAGATCGAGAAGGCACACCAGGAGATCTACAACACGCTCCTGCAGGTGCTC GAGGACGGCCGTCTCACCGACGGTCAGGGCCGGACCGTGGACTTCAAGAACACGGTGCTCATCTTCACCTCGAACCTCGG CACGTCGGACATCTCCAAGGCCGTGGGTCTCGGCTTCACGTCCGGCAAGGGCGACGAGTCGAACTACGAGCGGATGAAGC TCAAGGTGCACGACGAGCTGAAGAAGCACTTCCGTCCCGAGTTCCTCAACCGCATCGACGACATCGTCGTGTTCCACCAG CTCACCACCGAGCAGATCGTTCAGATGGTGGACCTGATGGTCGCGCGCGTCGAGGTGGCCTTGAAGAACAAGGACATGAC GATGGAGGTCAGCGAGAAGGCCAAGGCGCTGCTGGCCAAGCGTGGCTTCGATCCGGTCCTGGGTGCACGGCCGCTGCGTC GCACCATCCAGCGCGAGATCGAGGATCAGCTGTCGGAGAAGATCCTCTTCGGCGAGGTCGGACCCGGTCAGATCGTGTAC GTCGACGTCGACAACTGGGACGGTGAAGGCGCGGGCGAGGACGCGAAGTTCACGTTCCGCGGCGAGGCGAAGCCGGTCAC GGTTCCCGACGAGGTTCCGGTCGACTTGGCGAAGTCGGGCGCAGCCGACTCGGAGTAG Protein sequence : MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPF TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKEPAESGGTRGEA GTPSTSLVLDQFGRNLTQAALEGKLDPVIGRSKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVNGEVPETL KDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEINTRGDIILFIDELHTLVGAGAAEGAIDAASILKPKLARGELQTIGA TTLDEYRKYIEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDGALVAAATLADRYINDRFLPDKAIDL IDEAGARMRIRRMTAPPDLREFDDKIADARREKESAIDAQDFEKAANLRDKEKTLVAQRAEREKQWRSGDLDVIAEVDDE QIAEVLGNWTGIPVFKLTEEETTRLLRMEEELHKRIIGQEDAVKAVAKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTEL AKSLANFLFGEDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFSVVLFDEIEKAHQEIYNTLLQVL EDGRLTDGQGRTVDFKNTVLIFTSNLGTSDISKAVGLGFTSGKGDESNYERMKLKVHDELKKHFRPEFLNRIDDIVVFHQ LTTEQIVQMVDLMVARVEVALKNKDMTMEVSEKAKALLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFGEVGPGQIVY VDVDNWDGEGAGEDAKFTFRGEAKPVTVPDEVPVDLAKSGAADSE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 82 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-89 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_002781531.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 60 |
| clpC | YP_002781531.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0080 | Protein | 3e-144 | 52 |
