Gene Information

Name : copB (ROP_33330)
Accession : YP_002780525.1
Strain : Rhodococcus opacus B4
Genome accession: NC_012522
Putative virulence/resistance : Resistance
Product : copper-transporting ATPase CopB
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2217
EC number : 3.6.3.4
Position : 3605325 - 3607379 bp
Length : 2055 bp
Strand : +
Note : -

DNA sequence : 
ATGTCGCACAGCCCGGAGACACGAGAGGTACCCGCCGCACCGAAAACCCACGACAAACACGCCGGCCACGGCGCGCACGG
CGAGGTGTTCCGGCAGAAGTTCTGGATCAGTCTCGCACTGTCGGTGCCGGTGGTGGTGTTCAGCCACATGTTCGCCGAAC
TCCTCGGCTACTCGGTCCCGGACTTTCCCGGCGCGTCCTGGATTCCGCCGCTCGTCGGCACCGCGATCTTCTTCTACGGC
GGCGCACCGTTTCTCACCGGCGCGTGGCGCGAGCTGAAGTCGCGGCAGCCGGGCATGATGCTGCTGATCGGGATGGCGAT
CACGGTCGCGTTCCTCGCCTCGTGGGTGACGACCCTGCAGATCGGCGGGTTCAACCTCGACTTCTGGTGGGAACTGGCGC
TTCTCATCGTGATCATGCTGCTCGGTCACTGGCTGGAGATGCGGGCGCTGGGGTCGGCGTCCGGCGCCCTCGACGCGCTC
GCCGCGCTGCTCCCGGACACCGCGGACCGGATCACCGACGACGGCGTCACCGAGGTGCCCGTCTCCGAACTCGCCACGGG
CGACCTGGTGCTGGTGCGGGCCGGTGGCCGCATCCCCGCGGACGGCACCGTCGCGGACGGCCGCGCGGAGGTCGACGAGT
CGATGATCACCGGCGAATCCAATCCCGTCCCACGGTCGGTCGGTGACCCAGTGGTCGCGGGCACCGTCGCCACCGACAGC
GCGCTGCGGATCACCGTCGGCGCCGTGGGGGAGGACACCGCCCTCGCGGGCATCCAGCGGTTGGTCGCCGACGCGCAATC
GTCCTCGTCCCGCGCGCAGGCCCTCGCCGACCGCGCCGCGGCGTTCCTGTTCTACTTCGCCTCCGTCGCAGGGCTTCTTA
CGTTCGTGGTGTGGTCGCTGCTCGGCAACGTGGACGAGGCCGTCGTCCGGACCGTGACCGTTCTGGTGATCGCCTGCCCG
CACGCCCTCGGCCTGGCGATACCCCTCGTGATCGCCATTTCCACCGAACGCGCCGCGAGGGCCGGTGTGCTGGTGAAGGA
CCGGCTGGCGCTGGAGCGAATGCGCGGCGTCGACGTCGTGCTGTTCGACAAGACCGGCACCCTCACGCAGGGCAGGCACG
CGGTGACGGGCGTCGTCGCGACCGCTGGTGTCGCCGAGACCGGCCTGCTCGCGCTCGCCGCCGCGGTCGAGGCCGACAGC
GAGCACCCGGTCGCCCGCGCGATCGTCGCCGAGGCCGCCGCGAAGGTGCCCGCCGAGTCCCGCCGCGCCGCGTCCGAGTT
CCGGTCGCTGCCGGGTCGTGGCGTCCGGGCCGTGGTCGACGGTGAGGAAGTGTCCGTCGGCGGACCGGCGATGCTCGGCG
AACTGCACGTGAAGATTCCCGACGACGTTGCAGCGCAGGCGAAAAGGTGGGTCGACCGCGGCGCCGCCGTCCTCCACGTC
GTCCGCGGCGGGACGGCGCTCGGCGCGGTGGCGCTCGAGGACGCCGTCCGCGAGGAGTCCCGGCAGGCGATCGACGCCCT
GCACGCACGGGGCGTGAAGGTCGCGATGATCACCGGCGACGCCCGGCAGGTCGCCGACGCCGTCGCCGCCGACCTCGGAA
TCGACGAGGCGTTCGCCGACGTGCTGCCGGAGAACAAGGACGCGGAAGTGGCTGCGCTGCAACAGCGTGGTCATCGGGTG
GCGATGGTCGGCGACGGCGTCAACGACGCACCGGCCCTCGCCCGCGCCGACGTGGGTGTCGCCATCGGGGCCGGCACCGA
CGTCGCCATCGAATCGGCGGGTGTTGTCCTCGCCGCCGACGATCCCCGCGCCGTGTTGTCGATCATCGACCTGTCGCAGG
CGAGCTACCGCAAGATGTGGCAGAACCTGGTGTGGGCCACCGGATACAACATCATCGCCGTCCCCTTGGCGGCCGGTGTC
GTCGCGTTCGCCGGGGTCGCGATCTCCCCGGCGGTCGCGGCGATCCTGATGTCGATCTCCACCATCGTGGTCGCACTCAA
CGCCCAGCTGTTGCGAAGACTAAATCTGGATCCGGAACGCTTGGCGCGGAGGTGA

Protein sequence : 
MSHSPETREVPAAPKTHDKHAGHGAHGEVFRQKFWISLALSVPVVVFSHMFAELLGYSVPDFPGASWIPPLVGTAIFFYG
GAPFLTGAWRELKSRQPGMMLLIGMAITVAFLASWVTTLQIGGFNLDFWWELALLIVIMLLGHWLEMRALGSASGALDAL
AALLPDTADRITDDGVTEVPVSELATGDLVLVRAGGRIPADGTVADGRAEVDESMITGESNPVPRSVGDPVVAGTVATDS
ALRITVGAVGEDTALAGIQRLVADAQSSSSRAQALADRAAAFLFYFASVAGLLTFVVWSLLGNVDEAVVRTVTVLVIACP
HALGLAIPLVIAISTERAARAGVLVKDRLALERMRGVDVVLFDKTGTLTQGRHAVTGVVATAGVAETGLLALAAAVEADS
EHPVARAIVAEAAAKVPAESRRAASEFRSLPGRGVRAVVDGEEVSVGGPAMLGELHVKIPDDVAAQAKRWVDRGAAVLHV
VRGGTALGAVALEDAVREESRQAIDALHARGVKVAMITGDARQVADAVAADLGIDEAFADVLPENKDAEVAALQQRGHRV
AMVGDGVNDAPALARADVGVAIGAGTDVAIESAGVVLAADDPRAVLSIIDLSQASYRKMWQNLVWATGYNIIAVPLAAGV
VAFAGVAISPAVAAILMSISTIVVALNAQLLRRLNLDPERLARR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH0105 YP_252020.1 hypothetical protein Not tested SCCmec Protein 1e-67 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copB YP_002780525.1 copper-transporting ATPase CopB BAC0629 Protein 4e-110 47
copB YP_002780525.1 copper-transporting ATPase CopB BAC0101 Protein 3e-71 44
copB YP_002780525.1 copper-transporting ATPase CopB BAC0079 Protein 2e-106 43
copB YP_002780525.1 copper-transporting ATPase CopB BAC0183 Protein 4e-61 42
copB YP_002780525.1 copper-transporting ATPase CopB BAC0383 Protein 5e-81 41