Gene Information

Name : ROP_20130 (ROP_20130)
Accession : YP_002779205.1
Strain : Rhodococcus opacus B4
Genome accession: NC_012522
Putative virulence/resistance : Virulence
Product : OmpR family two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2143837 - 2144496 bp
Length : 660 bp
Strand : -
Note : -

DNA sequence : 
GTGCAGATCGCGGTGGTCGAGGACGACGACGGAGTCGGCGACGCACTCGTGGAGGCGCTGGGAACCCACGGCCACGAGGC
GGTGCGCATGCGCCGCGGCTCCGATCTCCTTCTCGGCCATCGCGGTATGGACGCGGTGATCCTCGACCTCGGTCTCCCCG
ACGCGGACGGCCTGCAGGTGCTCCGGCAGCTGCGGGCCGTCAGCGACGTTCCGGTGGTGATCCTCACCGCCCGCGACGAC
GAACGGTCGGTGGTGCGGGGACTGCGCGGTGGCGCGGACGACTACCTCGTCAAACCGGCGCGGCTCGCGGAACTGCTGGC
CCGGCTCGACGTCGTGACCCAGCGCAGGCGCGCGACCGGACCCTCGGCTGAGCAGACGGTCACCGAGGGTGACGTGGTGG
TCGATCTGGCGGCGCGCGAGGTGGAGGTCGGTGGGGCGCCGGTTACGTTGACGGCCAAGGAGTTCGAGCTTCTCGAGGTG
CTCGTCACCCGTCCCGGCGCCGCCGTGAGCCGTCAGCAGTTGATGGACGCCGTGTGGGGCGACGCGTACGTGGCCATCTC
CCGCACCCTCGACGTGCACATGACGGGGCTGCGCGCGAAACTGGGCCGCCCCGGGCTCATCTCGACCATCCGCGGGTATG
GCTACCGCTGGGGTACGTGA

Protein sequence : 
MQIAVVEDDDGVGDALVEALGTHGHEAVRMRRGSDLLLGHRGMDAVILDLGLPDADGLQVLRQLRAVSDVPVVILTARDD
ERSVVRGLRGGADDYLVKPARLAELLARLDVVTQRRRATGPSAEQTVTEGDVVVDLAAREVEVGGAPVTLTAKEFELLEV
LVTRPGAAVSRQQLMDAVWGDAYVAISRTLDVHMTGLRAKLGRPGLISTIRGYGYRWGT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-24 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-23 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ROP_20130 YP_002779205.1 OmpR family two-component response regulator BAC0083 Protein 4e-23 42
ROP_20130 YP_002779205.1 OmpR family two-component response regulator BAC0487 Protein 4e-25 41
ROP_20130 YP_002779205.1 OmpR family two-component response regulator BAC0125 Protein 4e-22 41
ROP_20130 YP_002779205.1 OmpR family two-component response regulator BAC0111 Protein 1e-23 41
ROP_20130 YP_002779205.1 OmpR family two-component response regulator BAC0197 Protein 2e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ROP_20130 YP_002779205.1 OmpR family two-component response regulator VFG1389 Protein 2e-28 45
ROP_20130 YP_002779205.1 OmpR family two-component response regulator VFG0596 Protein 8e-25 44
ROP_20130 YP_002779205.1 OmpR family two-component response regulator VFG1390 Protein 3e-26 41