Gene Information

Name : ROP_pROB01-03830 (ROP_pROB01-03830)
Accession : YP_002776734.1
Strain :
Genome accession: NC_012520
Putative virulence/resistance : Unknown
Product : putative transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 361769 - 362512 bp
Length : 744 bp
Strand : -
Note : fragment

DNA sequence :
GTGATCGTCGACTACATAGACGTTCACCGCTCCCGTTTCGGGGTCGACCCGATCTGTACTGTGCTCACCGAGCACGGCAT
CAGCATCGCCCCGTCCACCTATTACAAGGCCAAGCAGCGCGGACCCATCTCGGGCACCGACCTGACCGAGGCTTACGCCG
CCAACGCCGTGCACAGGGTGTACGTGGCCAACAAGCGCCTCTACGGTGCCCGCAAGATCTGGTGGGCGATGAAACACGCC
GGCCACGACATCGGGCGCGATCAGGTGGCGCGCCTGATGAAGATCTGCGGGATCCGCGGGGTGGTCCGCGGCAAACGCCG
CACGACCACCACCGAGCGCGACGAGCGGGCACCACGACACCCGGATCTGATCAACAGGAAATGGGACGTCCCGGACCGCC
CCGATCAGTGGTGGGTCGCGGACTTTACGTACGTGTGGACACTCACCGGATTCGTGTACACGGCGTTCTGTGTCGACGTG
TTCTCCCGCCGGATCCTCGGGTGGCAGGTGATGACATGCAAGACCACCGTGTTGGTCACCGGAGTGCTCGAGCAGGCGTT
GTTCACCCGCAGGAGAACCGACATCCGTTTCACCTCAACGGGTTTGGTGCATCACAGCGATGCGGGGAGCCAGGGCGGAT
TCAACCGGTCGTCGCAACACCGTGCCGTGAGGACGAGTGTACCTGTTCGGCAAACACTTCCGCTGGAGTTCTCCAACCGT
GCACTTTTCGGGGGCGGTTGTTGA

Protein sequence :
MIVDYIDVHRSRFGVDPICTVLTEHGISIAPSTYYKAKQRGPISGTDLTEAYAANAVHRVYVANKRLYGARKIWWAMKHA
GHDIGRDQVARLMKICGIRGVVRGKRRTTTTERDERAPRHPDLINRKWDVPDRPDQWWVADFTYVWTLTGFVYTAFCVDV
FSRRILGWQVMTCKTTVLVTGVLEQALFTRRRTDIRFTSTGLVHHSDAGSQGGFNRSSQHRAVRTSVPVRQTLPLEFSNR
ALFGGGC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-24 43
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 2e-27 43
CDC7B_2035 YP_005163476.1 transposase-like protein Not tested Not named Protein 1e-26 43
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 9e-24 43
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 4e-24 43
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 9e-23 43
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 9e-23 43
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 9e-23 43
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 1e-22 43
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-22 43
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-23 43
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-23 42
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-23 42
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 2e-23 42
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 3e-23 42
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 3e-23 42
Z1198 NP_286733.1 transposase Not tested TAI Protein 3e-23 42
Z1638 NP_287141.1 transposase Not tested TAI Protein 3e-23 42
Z1221 NP_286756.1 transposase Not tested TAI Protein 3e-23 42
CDCE8392_1985 YP_005134516.1 transposase-like protein Not tested Not named Protein 1e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ROP_pROB01-03830 YP_002776734.1 putative transposase VFG1602 Protein 1e-23 42