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Name : clpC (RER_06460) Accession : YP_002764093.1 Strain : Rhodococcus erythropolis PR4 Genome accession: NC_012490 Putative virulence/resistance : Virulence Product : putative ATP-dependent Clp protease ATP-binding subunit ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 723922 - 726465 bp Length : 2544 bp Strand : + Note : - DNA sequence : ATGTTCGAGAGGTTCACCGATCGCGCGCGGCGCGTTGTTGTCCTGGCTCAAGAAGAAGCCAGGATGCTCAACCACAACTA CATCGGCACGGAGCACATCCTTCTCGGCCTCATTCACGAGGGCGAAGGTGTTGCAGCCAAGTCGTTGGAGTCGTTGGGTA TCTCCCTCGAGGGAGTCCGCAGCCAGGTCGAGGAGATCATCGGCCAGGGCCAGCAGGCTCCGTCCGGTCACATCCCCTTC ACACCGCGCGCCAAGAAAGTCCTCGAGCTGAGTCTGCGCGAAGCGCTGCAGCTCGGACACAACTACATCGGTACGGAGCA CATTCTGCTCGGTCTCATCCGTGAGGGTGAGGGCGTAGCAGCCCAGGTTCTGGTCAAGCTCGGTGCCGATCTCAACCGTG TCCGCCAGCAGGTCATCCAGCTGCTGTCGGGCTACCAGGGCAAGGAGCCCACCGAAACCGGTGGCACCCGCGGAGAGGCC GGCACGCCGTCCACCTCGCTCGTGCTCGACCAGTTCGGTCGCAATCTGACGCAAGCTGCCCTCGAAGGCAAGCTGGACCC GGTCATCGGCCGCTCGAAGGAAATCGAGCGCGTCATGCAGGTTCTCTCGCGTCGTACCAAGAACAACCCGGTTCTCATCG GTGAACCCGGTGTCGGTAAGACCGCTGTGGTCGAGGGCCTGGCTCAGGCAATCGTCAACGGTGAGGTCCCCGAGACCCTC AAGGACAAGCAGCTGTACACGCTCGACCTCGGGTCGCTCGTGGCCGGCAGCCGTTACCGCGGTGACTTCGAAGAGCGCCT GAAGAAGGTTCTCAAGGAGATCAACACCCGCGGAGACATCATCCTGTTCATCGACGAGCTGCACACCCTCGTTGGTGCGG GCGCGGCCGAGGGCGCTATCGACGCGGCCTCCATCCTCAAGCCCAAGCTTGCCCGCGGTGAGCTGCAGACCATCGGTGCT ACCACTCTCGACGAGTACCGCAAGTACATCGAGAAGGATGCCGCTCTCGAGCGTCGTTTCCAGCCCGTTCAGGTGGGCGA GCCGACCGTCGAGCACACCATCGAGATCCTCAAGGGTCTTCGTGACCGCTACGAGGCTCACCACCGTGTCTCCATCACGG ACGGTGCTCTCGTGGCAGCGGCGACGCTGGCCGACCGCTACATCAACGACCGCTTCTTGCCGGACAAGGCGATCGACCTC ATCGACGAGGCGGGCGCGCGAATGCGCATCCGTCGGATGACTGCACCGCCGGACCTGCGCGAATTCGACGATCGCATCGC CGACGCGCGTCGCGAGAAGGAGTCCGCGATCGACGCGCAGGACTTCGAGAAGGCTGCGAACCTGCGTGACAAGGAGAAGA CCCTCGTTGCTCAGCGCGCTGAGCGTGAGAAGCAGTGGCGTGCGGGCGACCTGGACGTCATCGCCGAGGTCGACGACGAG CAGATCGCCGAGGTTCTGGGCAACTGGACCGGTATCCCCGTCTTCAAGCTCACCGAGGAGGAGACCACTCGTCTGCTCCG CATGGAAGAGGAACTGCACAAGCGGATCATCGGCCAGGAAGAGGCAGTCAAGTCCGTCTCGAAGGCGATCCGTCGTACGC GTGCAGGTCTGAAGGATCCCAAGCGTCCCTCGGGCTCGTTCATCTTCGCCGGCCCGTCCGGTGTCGGTAAGACGGAGCTC GCGAAGTCGCTCGCCAACTTCCTGTTCGGCGACGACGACGCTCTGATCCAGATCGACATGGGCGAGTTCCACGACCGCTT CACCGCTTCGCGTCTGTTCGGTGCCCCTCCCGGGTACGTCGGATACGAAGAGGGTGGCCAGCTCACCGAGAAGGTGCGCC GCAAGCCGTTCAGCGTTGTGCTGTTCGACGAGATCGAGAAGGCACACCAGGAGATCTACAACACCCTCCTGCAGGTGCTC GAGGACGGCCGTCTCACCGACGGTCAGGGACGTACCGTCGACTTCAAGAACACGGTGCTGATCTTCACGTCCAACCTCGG TACGTCGGACATCTCCAAGGCAGTCGGCCTGGGCTTCAGCTCGGGAACGGGCACGGAGTCGAACTACGAGCGCATGAAGC TCAAGGTGCACGACGAGCTGAAGAAGCACTTCCGTCCCGAGTTCTTGAACCGTATCGACGACATCGTCGTCTTCCATCAG CTCACGAACGAGCAGATCGTTCAGATGGTCGACCTGATGCTCGCTCGCGTCGAGGCGGCACTCAAGAACAAGGACATGGC CATGGAGGTCACCGACAAGGCCAAGTCGCTTCTGGCCAAGCGCGGATTCGATCCGGTACTGGGTGCACGACCGCTGCGTC GCACCATCCAGCGCGAGATCGAGGACCAGATGTCCGAGAAGATCCTCTTCGGAGAGATCGGACCCGGCCACATCGTGCTC GTCGACGTCGAGAACTGGGACGGCGAAGGCTCGGGCGAGGACGCGAAGTTCACGTTCACGCCCACCAAGAAGCCGATCGA CGTGCCGGACGCACCGCCGATCGAGCTGACCAAGGCCGGCGAAAGCGAAAGCGCAGCAGAGTAG Protein sequence : MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPF TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKEPTETGGTRGEA GTPSTSLVLDQFGRNLTQAALEGKLDPVIGRSKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVNGEVPETL KDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEINTRGDIILFIDELHTLVGAGAAEGAIDAASILKPKLARGELQTIGA TTLDEYRKYIEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDGALVAAATLADRYINDRFLPDKAIDL IDEAGARMRIRRMTAPPDLREFDDRIADARREKESAIDAQDFEKAANLRDKEKTLVAQRAEREKQWRAGDLDVIAEVDDE QIAEVLGNWTGIPVFKLTEEETTRLLRMEEELHKRIIGQEEAVKSVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTEL AKSLANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFSVVLFDEIEKAHQEIYNTLLQVL EDGRLTDGQGRTVDFKNTVLIFTSNLGTSDISKAVGLGFSSGTGTESNYERMKLKVHDELKKHFRPEFLNRIDDIVVFHQ LTNEQIVQMVDLMLARVEAALKNKDMAMEVTDKAKSLLAKRGFDPVLGARPLRRTIQREIEDQMSEKILFGEIGPGHIVL VDVENWDGEGSGEDAKFTFTPTKKPIDVPDAPPIELTKAGESESAAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 82 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_002764093.1 | putative ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 60 |
| clpC | YP_002764093.1 | putative ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0080 | Protein | 1e-145 | 51 |
