Gene Information

Name : RER_57340 (RER_57340)
Accession : YP_002769181.1
Strain : Rhodococcus erythropolis PR4
Genome accession: NC_012490
Putative virulence/resistance : Virulence
Product : putative iron-siderophore ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 6203112 - 6203936 bp
Length : 825 bp
Strand : -
Note : -

DNA sequence : 
ATGACTACAGCTACTCCGGTATCGCGGCTACAGGCCGAGAAGATCGAGCTCCGGTACGCCGATCGAACCATCGTGGACGA
GTTGAGTCTCGAGATCCCCGACGGCGGTTTCACCGTGGTCGTCGGACCGAACGGGTGCGGCAAGTCGACGTTGTTGCGTG
CGCTCGGCAGAATGCTCGCGCCGCGATCGGGTCGGGTTCTGCTCGACGGTAACGACATTCGGTCCTACCGCACCAAGGAA
GTGGCTCGGCGCATCGCTCTGCTGCCGCAGTCTCCGCTCTCACCCGGAGCGATCACCGTGGCAGACCTCGTGGCTCGCGG
CCGATATCCGTACCAGAGCATGCTGCGCCAATGGTCACCCGAAGACGAGCGTGTTGTCGCCGAAGCGCTTGCCGAGGTCG
GAATGCGCAATGCAGCAGATCAATTGGTGGACGAACTGAGCGGTGGACAACGGCAGCGGGTATGGATCGCCATGACACTC
GCGCAGCGCACCCCGGTGTTGTTGCTCGACGAACCGACCACCTTTCTCGACATTGCCCACCAGATCGAGGTTCTCGACCT
CTGTTCCCAACTGCACCAGTCTGGTCGAACGTTGGTCGCGGTCCTGCACGACCTGAACCTCGCGGCTCGATATGCCACGC
ACGTAGTTGCCATGCGGTCCGGAAAAATCGTCATGCAGGGCAGTGCCTCGGACGTCTTCACCCCTGAGTTGCTGCGTGAA
GTGTTCGACCTCGAGGCTCTGGTCCTCGAAGATCCCGAAACCGGACGGCCACTTGTTGTTCCGCGTGATCGAAGAACTGC
CAGTCAGCTACCCGTCCACAACTGA

Protein sequence : 
MTTATPVSRLQAEKIELRYADRTIVDELSLEIPDGGFTVVVGPNGCGKSTLLRALGRMLAPRSGRVLLDGNDIRSYRTKE
VARRIALLPQSPLSPGAITVADLVARGRYPYQSMLRQWSPEDERVVAEALAEVGMRNAADQLVDELSGGQRQRVWIAMTL
AQRTPVLLLDEPTTFLDIAHQIEVLDLCSQLHQSGRTLVAVLHDLNLAARYATHVVAMRSGKIVMQGSASDVFTPELLRE
VFDLEALVLEDPETGRPLVVPRDRRTASQLPVHN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-61 49
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-61 49
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-61 49
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-61 49
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-61 49
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-53 47
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 4e-52 46
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-61 46
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-61 46
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-55 45
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-55 45
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-55 45
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-55 45
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 2e-37 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RER_57340 YP_002769181.1 putative iron-siderophore ABC transporter ATP-binding protein BAC0164 Protein 2e-52 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RER_57340 YP_002769181.1 putative iron-siderophore ABC transporter ATP-binding protein VFG0925 Protein 1e-71 54
RER_57340 YP_002769181.1 putative iron-siderophore ABC transporter ATP-binding protein VFG1042 Protein 2e-52 46