Gene Information

Name : RER_43420 (RER_43420)
Accession : YP_002767789.1
Strain : Rhodococcus erythropolis PR4
Genome accession: NC_012490
Putative virulence/resistance : Virulence
Product : putative ABC transporter permease protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG4779
EC number : -
Position : 4774420 - 4775469 bp
Length : 1050 bp
Strand : -
Note : -

DNA sequence :
GTGAGCATCGATTTCGGGCGCCCCACCACGGTGGTGCGCTCACCTAAAGAAGGCTGGTCCGCGCGGATCGACGTCCGCAC
GGTCACGGTTTGCCTCATCCTCGTTGCGCTTGCACTGGCGATCGGTGTCATCGCCCTCGGTAGTGGTGACTACCAGGTGC
CGATCGGGGACGTCCTCGGCGCACTGTTCGGCGAAGCGCCCGCGCGTATCCACATGGTCGTCGTGGAATGGCGTCTGCCC
CGAGTTCTGTTGGCGCTGATGCTCGGTGCGGCACTCGGCATGAGCGGTGCGATCTTCCAATCGCTCACCAGGAACCCGTT
GGGTAGCCCAGACATCATCGGCTTCAACTCCGGTGCGTACACGGGCGCTCTTGTGGTCATCCTCCTCATCGGTGGTACTT
ACTACGAGATCGCAGTCGGTGCTCTGGTGGGCGGAATCGCGACCGCAGCAGTGGTTTACCTCCTTGCGTACAAGCGTGGT
GTGCAGGGATTCCGGTTGATCATCGTCGGTATCGCCATCAGTGCGATGTTGGGCTCGGTCAACACCTGGATGATTCTCAA
GGCGAAACTTGACGACGCCATGGCCGCGGCAGTGTGGGGTGCCGGTTCGTTGAACGGTCTCGGCTGGACTCAGGTGTGGC
CGGTGGTCGTCGTGCTGGCCATCCTCGTTCCGCTGATCCTGGTGTTGGGCAGGCGGATGCAGATGCTCGAGATGGGCGAC
GACGCCGCCAAGGCGCTCGGAGTCCGGGCCGAACCCACGCGGCTTTCCCTGGTTGTTCTGGGTGTCGCTCTGACGGCCAT
GGTGACAGCAGCGGCCGGACCGATCGGGTTCGTCTCGCTGGCGGCTCCGCAATTGGTGAGGCGATTGACCGGTAGTGCCG
GAGTGACCCTGCTGCCGTCGGCAGCAATGGGTGGCGCGTTGTTGATGGTCAGCGACTGGGTGGCGCAGCGAGCTTTTGCA
CCGACACAGTTGCCGGTCGGCGTCGTCACGGTCTCCATCGGTGGCATCTATTTTGTATGGCTTCTCGCGCGAGAGGCCCG
TAAGCAGTGA

Protein sequence :
MSIDFGRPTTVVRSPKEGWSARIDVRTVTVCLILVALALAIGVIALGSGDYQVPIGDVLGALFGEAPARIHMVVVEWRLP
RVLLALMLGAALGMSGAIFQSLTRNPLGSPDIIGFNSGAYTGALVVILLIGGTYYEIAVGALVGGIATAAVVYLLAYKRG
VQGFRLIIVGIAISAMLGSVNTWMILKAKLDDAMAAAVWGAGSLNGLGWTQVWPVVVVLAILVPLILVLGRRMQMLEMGD
DAAKALGVRAEPTRLSLVVLGVALTAMVTAAAGPIGFVSLAAPQLVRRLTGSAGVTLLPSAAMGGALLMVSDWVAQRAFA
PTQLPVGVVTVSIGGIYFVWLLAREARKQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagB YP_005680308.1 Iron-enterobactin transporter Virulence PiCp 1 Protein 3e-50 50
fagB YP_005682398.1 Iron-enterobactin transporter Virulence PiCp 1 Protein 2e-50 50
fagB YP_003782431.1 integral membrane protein Not tested PiCp 1 Protein 2e-50 50
fagB YP_005684489.1 Iron-enterobactin transporter Virulence PiCp 1 Protein 2e-50 50
iusC YP_005143744.1 iron ABC transporter permease Virulence Not named Protein 2e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RER_43420 YP_002767789.1 putative ABC transporter permease protein VFG0928 Protein 1e-49 53