Gene Information

Name : RER_43410 (RER_43410)
Accession : YP_002767788.1
Strain : Rhodococcus erythropolis PR4
Genome accession: NC_012490
Putative virulence/resistance : Virulence
Product : putative ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 4773545 - 4774423 bp
Length : 879 bp
Strand : -
Note : -

DNA sequence : 
GTGATCGGTGAAGGAACGAGGAACAGCGTGAACGAGGAAAGTGCGGCGGGCGTCGTGGCTGAGAAGACGAATCGGCTTCG
CGCCGAGGACGTCACGATCGGGTACGACAAGCGCGTCATCTCGGAGCACCTCGACGTCGAGATCCCCGACGGTGGCTTCA
CCGTCATCGTCGGTCCCAACGCCTGCGGCAAGTCGACACTTCTGCGTGCGTTGTCCCGGTTGCTCAAGCCGACCACCGGC
AAGGTTCTTCTCGACGGCAAAGCGATCACGTCGTACCCGGCCAAGGAAGTTGCGAGGCGGCTCGGGCTTCTGCCGCAGAC
ATCCATCGCCCCGGACGGTATCAAGGTCGCAGATCTGGTTGCGCGAGGACGTTATCCGCATCAGAAGCTGATCCGCCAGT
GGTCGCGAGAGGACGAGGCCGCCGTCATCAAGGCGATGGAGGCAACCAAGGTCACGGATCTCTCTGCCAGGCCGGTCGAC
GAACTGTCCGGTGGTCAGCGCCAACGTGTCTGGGTCGCGATGGTTCTCGCGCAGCAGACTCCGTTGGTGCTGCTGGACGA
GCCGACGACGTTCCTCGACATCGCGCATCAGATCGAGCTTCTGGAGTTGTGCCGCGATCTGAACGAGAACGACGGGCACA
CGCTGGTGGCTGTGCTTCACGATCTCAATCACGCGTGCCGCTACGGAACTCACATCATCGCGATGAAGGACGGCGCCGTG
GTCGCCGAAGGCCCGCCCGCGGAGATCATCACCGAAGAACTGGTGCAGGAGGTGTTCGGCATGGCGTGCCGCATCATCGA
CGATCCGGTTTCCCACACACCACTTGTCATTCCGCTGGGACGCGAGCGTCAGCGAAACATCGAAGGAGCAAAGGTATGA

Protein sequence : 
MIGEGTRNSVNEESAAGVVAEKTNRLRAEDVTIGYDKRVISEHLDVEIPDGGFTVIVGPNACGKSTLLRALSRLLKPTTG
KVLLDGKAITSYPAKEVARRLGLLPQTSIAPDGIKVADLVARGRYPHQKLIRQWSREDEAAVIKAMEATKVTDLSARPVD
ELSGGQRQRVWVAMVLAQQTPLVLLDEPTTFLDIAHQIELLELCRDLNENDGHTLVAVLHDLNHACRYGTHIIAMKDGAV
VAEGPPAEIITEELVQEVFGMACRIIDDPVSHTPLVIPLGRERQRNIEGAKV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-72 52
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 6e-72 52
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 5e-72 52
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 5e-72 52
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 5e-66 51
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 8e-67 48
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 8e-67 48
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 9e-54 47
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-53 42
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 2e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RER_43410 YP_002767788.1 putative ABC transporter ATP-binding protein BAC0164 Protein 5e-54 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RER_43410 YP_002767788.1 putative ABC transporter ATP-binding protein VFG0925 Protein 3e-86 61
RER_43410 YP_002767788.1 putative ABC transporter ATP-binding protein VFG1042 Protein 5e-54 47