Gene Information

Name : RER_31060 (RER_31060)
Accession : YP_002766553.1
Strain : Rhodococcus erythropolis PR4
Genome accession: NC_012490
Putative virulence/resistance : Virulence
Product : putative iron-siderophore ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 3344111 - 3344962 bp
Length : 852 bp
Strand : -
Note : -

DNA sequence : 
ATGACCACCATCGCCCAGTCCACCGATGCTCCTTCGCGTCTCGTCGCGCAGAATCTGACGCTCGGGTACGGGGATCGCAT
CATCGTCGACGGACTCGATCTCGAGATCCCCACCGGCGTGATCACGACGGTCATCGGACCCAACGGTTGCGGCAAGTCGA
CGCTCTTGCGCGCGCTCGGTCGTCTGCTCAAGCCAAAGGGTGGATCGGTCATCCTCGACGGCAAGGCGATCAGTTCGATG
AAGACCAAGGAAGTCGCGCGGGTGCTCGGAATGCTCCCCCAGACTCCGGTTGCGCCGGAAGGGCTCACCGTCGCCGATTT
GGTCTCACGTGGGCGCCACCCGCACCAGTCGTGGATCAGGCAGTGGTCCGCGGACGACGAGGGCGAGGTCGCCGAAGCAC
TAGAGCTGACCGGTGTCTCGGATCTCGCCGATCGGCCCGTCGATCAATTGTCCGGCGGTCAGCGTCAGCGAGCCTGGATC
TCGATGGCTCTCGCCCAGGGAACCGACATCCTGCTTCTCGACGAACCGACTACCTATCTGGACCTCGCGCACTCGATGGA
AGTCCTCGACCTGGTGGATCAACTCCACGAGGAAATGGGGCGCACCGTGGTGATGGTTCTGCACGACCTCAATCTCGCGG
TCAGATACAGCGATCATCTGATCGTGATGCGCGACGGCGCCGTCGTCGCTTCTGGTGTCCCCAAGGACATCATTTCCGCG
GAACTTCTGCTCGAGGTGTTCGGTCTCGAAGCCGCGGTCATCGACGATCCCGTCTCGGATCGGCCGCTGATCGTTCCGAT
CGGAACCCGGCACGTGTTCGGCGCCGTCGGCGGGCCGGCAAAGCCTGCGTGA

Protein sequence : 
MTTIAQSTDAPSRLVAQNLTLGYGDRIIVDGLDLEIPTGVITTVIGPNGCGKSTLLRALGRLLKPKGGSVILDGKAISSM
KTKEVARVLGMLPQTPVAPEGLTVADLVSRGRHPHQSWIRQWSADDEGEVAEALELTGVSDLADRPVDQLSGGQRQRAWI
SMALAQGTDILLLDEPTTYLDLAHSMEVLDLVDQLHEEMGRTVVMVLHDLNLAVRYSDHLIVMRDGAVVASGVPKDIISA
ELLLEVFGLEAAVIDDPVSDRPLIVPIGTRHVFGAVGGPAKPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-76 58
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 7e-66 50
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 7e-66 50
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 7e-66 50
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 7e-66 50
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 1e-65 49
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 1e-65 49
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 4e-58 48
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-56 43
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 2e-38 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RER_31060 YP_002766553.1 putative iron-siderophore ABC transporter ATP-binding protein BAC0164 Protein 2e-58 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RER_31060 YP_002766553.1 putative iron-siderophore ABC transporter ATP-binding protein VFG0925 Protein 3e-70 53
RER_31060 YP_002766553.1 putative iron-siderophore ABC transporter ATP-binding protein VFG1042 Protein 2e-58 48