Gene Information

Name : RER_26980 (RER_26980)
Accession : YP_002766145.1
Strain : Rhodococcus erythropolis PR4
Genome accession: NC_012490
Putative virulence/resistance : Virulence
Product : 2,3-dihydroxybenzoate-AMP ligase
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG1021
EC number : 6.3.2.-
Position : 2890647 - 2892311 bp
Length : 1665 bp
Strand : +
Note : -

DNA sequence : 
ATGACATCGAGGATCGCTCGCGAGCCCTTGGCGCCTGTCGCACAGTATCCACCCGAATTGGTGACGCATTATCGGGAACG
AGGCTACTGGACTGACGAGACGTTGGCCGGATTCATCACGGCCGCGGCCGCACGGCATCCCGACAACGAAGCGGTAGTAG
GCAGCGATGCCACCGGGGCACAAACACGGCTGACGTATTGCGACCTCGATCGTCGTAGCTCGGCAGTGGCCCGAGGCCTG
TCCGGGTTGGGTGTTCGCGCCGGTGACCGTGTGCTTCTGCAGCTGCCGAACATCGTGGAATACGTCGAAGCATTGTTCGG
TGTGTTGAAGCTCGGCGCCCTGCCGGTATTCGGGTTGCCGGCGCATCGCCGAACCGAAATCGGATACTTCTGCCAGTTCG
CTGATGTCGCTGCCTATATCGTCGCCGATCGTCATGGCGGGTTCGACTACCGCGCACTGGCGCGTGAGGTGAACGAAGGC
CTCGAGACTCCGCCTGTTGTGATCGTGGCCGGTGACCCCGAAGAGTTTGTCGGTTTCGATTCGCTGCGCGGATACGAGGT
TCCCGTTCTTGCCGACGTCGATCCGTTGTCGGTCGCCTTTCTTCAGCTTTCCGGTGGCACGACCGGTGTTCCGAAGCTGA
TTCCGCGAACGCACGCCGACTACCTCTACTCGGTGCGGGCATCCAACCCGATCTGCGGCGTCGACGATTCGACGCGCATG
TTGGTGGTTCTCCCTGCTGCGCACAATTTTCCGATGAGTTCGCCGGGCATCCTGGGTGTCTTCCACGCGGGCGGCACCGT
GGTTCTGGCGCCGGACACCATGCCGTCCACAGCTTTCGGTCTGATCGAATCAGAGCGAGTCACGCACGCGTCGCTGGTTC
CACCGATCGCATTGGCTTGGATGGCCGCCCCCAGCAAGGCAGATCACGACCTGTCGAGCTTGCGGGTTCTCGGCGTCGGC
GGAGCGAAGTTCAGCGCCGAAGCTGCCGCACGCGTACCCACGGAGCTGGGCTGCACCCTTCAGCAGGTGTTCGGCATGGC
TGAGGGTTTGGTCAACTACACCCGCCTCGACGACACGCAAGAATTGATCGTCAGCACGCAGGGCCGGCCCATTTCACCGG
ACGACGAGGTTCGTGTAGTCGATGACGATGGCGCGCTCGTCGAGCCCGGAACCACGGGGCACTTACTGACTCGGGGGCCG
TACACGATCCGTGGCTATTACCGGGCGGATGCGCACAATGCCGAGGTCTTCGACGCCGAAGGTTTCTATCGCACCGGCGA
TCTGGTCAGCGTCACCGATTCGGGACACCTGATTGTCGAGGGCCGCGCAAAGGACCAGATCAACCGCGGCGGTGAGAAGG
TGGCCGCCGAGGAGATCGAGAACCACCTGCTCTCGCATCCTGCTGTCCACGATGCGGCCGTCGTCGCTGTTCCCGACGAG
TACCTGGGCGAGCGAACCTGCGCCGTTCTGGTGATTTCCGGAGATGCACCGACCGTCGGCGAGATCAAGCGATACATACG
AGGCCGAGGCGTTGCGGCGTACAAGGTTCCGGATCGAGTGGAGTTCGTGACCGAGTTCCCCGTCACCGGCGTCGGAAAGA
CCAGCAAGGCGGCCTTGCGCCGTGTTCTCAGCGAATCGATTGCCGCACAGACTCTGTCGAGTTGA

Protein sequence : 
MTSRIAREPLAPVAQYPPELVTHYRERGYWTDETLAGFITAAAARHPDNEAVVGSDATGAQTRLTYCDLDRRSSAVARGL
SGLGVRAGDRVLLQLPNIVEYVEALFGVLKLGALPVFGLPAHRRTEIGYFCQFADVAAYIVADRHGGFDYRALAREVNEG
LETPPVVIVAGDPEEFVGFDSLRGYEVPVLADVDPLSVAFLQLSGGTTGVPKLIPRTHADYLYSVRASNPICGVDDSTRM
LVVLPAAHNFPMSSPGILGVFHAGGTVVLAPDTMPSTAFGLIESERVTHASLVPPIALAWMAAPSKADHDLSSLRVLGVG
GAKFSAEAAARVPTELGCTLQQVFGMAEGLVNYTRLDDTQELIVSTQGRPISPDDEVRVVDDDGALVEPGTTGHLLTRGP
YTIRGYYRADAHNAEVFDAEGFYRTGDLVSVTDSGHLIVEGRAKDQINRGGEKVAAEEIENHLLSHPAVHDAAVVAVPDE
YLGERTCAVLVISGDAPTVGEIKRYIRGRGVAAYKVPDRVEFVTEFPVTGVGKTSKAALRRVLSESIAAQTLSS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
irp5 CAA73130.1 Irp5 protein Virulence HPI Protein 1e-101 48
irp5 YP_001006819.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 2e-101 48
ybtE NP_993003.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 2e-101 47
ybtE YP_070120.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 2e-101 47
ybtE CAA21394.1 - Virulence HPI Protein 2e-101 47
ybtE AAA93464.1 yersiniabactin 2,3-dihydoxybenzoate-AMP ligase Virulence HPI Protein 1e-101 47
ybtE YP_853079.1 yersiniabactin siderophore biosynthetic protein Virulence PAI IV APEC-O1 Protein 2e-101 47
irp5 YP_002346898.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 2e-101 47
ybtE NP_669710.1 salicyl-AMP ligase Virulence HPI Protein 2e-101 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RER_26980 YP_002766145.1 2,3-dihydroxybenzoate-AMP ligase VFG0168 Protein 5e-119 50
RER_26980 YP_002766145.1 2,3-dihydroxybenzoate-AMP ligase VFG0932 Protein 4e-105 46
RER_26980 YP_002766145.1 2,3-dihydroxybenzoate-AMP ligase VFG1817 Protein 8e-109 46