|
Name : clpB (GAU_3878) Accession : YP_002763390.1 Strain : Gemmatimonas aurantiaca T-27 Genome accession: NC_012489 Putative virulence/resistance : Virulence Product : putative chaperone ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 4571986 - 4574649 bp Length : 2664 bp Strand : + Note : - DNA sequence : ATGTCGGTGAATCTTCGTGGCTTGATTGCCAAGCTCAACGCGCCCACCCGCAGCGCCGTCGAAGCGGCCGCTGGCTTGTG CCTGTCGCGCACCAATTACGACGTCGAAATCGAGCATCTGTTCGTCAAGCTGCTCGATTCCTCCGACAGTGACCTGGCCG CCATTCTCAAGCACTTCGGCGTCAATCGTTCGCGCCTGGCCGATGACATCGCGCGTGCACTCGACAAGCTCAAGACCGGC AACGCCCGCACGCCGTCCATCAGCCCGTCGGTGGTGAACGTGCTGCGTGAAGCCTGGGTGCTCGGTTCGGTCGAGTACGG CGCGCCGCGTGTGCGTTCGGGCCATGTGATGCTCGCCCTGCTGTCGGTGCCGGAACTGCAGCGCCTCTCGGCGGAGTTCA CGAAAGAATTCGAGAAGATCCCGGCCGATGTGCTCAAGAAAGACTTCGTGACCATCACGGCGTCTTCGGCCGAAGCGACG GCCGAAATCGGCAGCATCGATTCGGTGGCCGCGGGTGCAAGCGCCTCGAGCAGCGGCGGTGGTACCGCCAAGGCCGGTGG CCGCACGCCGAACCTCGATTCGTACACGGTCGACCTCACGGCCAATGCCAAGAGCGGCAAGATCGATCAGGTCCTCGGCC GCGACTTCGAAGTCCGTCAGGTGGTCGACATCCTCACGCGTCGTCGTCAGAACAACCCCATCCTCGTAGGTGAGGCTGGT GTCGGCAAGACGGCCGTCGTGGAAGGTTTTGCGCGCCGCATCGTGGACGGAGACGTGCCGCCTCCGCTGCGCAACGTGCG TCTGCTCTCGCTCGACCTGGCCATGCTGCAGGCCGGCGCGGGTGTGAAAGGTGAGTTCGAAAACCGCCTCAAGGGTCTGA TCGAGGAAGTGAAGAACTCCCCCACCCCGATCATTCTGTTCATCGACGAAGCCCACACGATGATCGGCGCGGGTGGTGCG GCCGGCCAGAACGACGCGGCCAACCTGCTCAAGCCGGCGCTCGCGCGCGGTGAGCTGCGCACCATCGCCGCCACCACGTG GAGCGAGTACAAGAAGTTCTTCGAGAAGGACCCGGCGCTTTCGCGTCGCTTCCAGCTCGTGAAGGTCGAAGAGCCCACCG AAGACGTGTGCTGCATCATGATGCGCGCCGTCGTGCCCTCGCTCGAGAAGCACCACACGGTGCACATCCTCGACAGCGGC ATGGAAGCGGCCGTGCGCCTGTCGCACCGCTACCTCGCCGACCGTCAGTTGCCCGACAAGGCCGTCAGCGTGCTCGACAC CGCCTGCGCGCGTCTCGCGCTGGGTCAGAGCGCCACGCCCGGCCCGGTCGAAGACTGCAAGCGCATCCTCGACGATCTCG CACTGCAGGATCGTGTGCTGAATCGTGAACAGACCGCCGGCGCCGATCACCGTGAACGTCTGGCCGGCATCGCCGAACGA CGCACGCAGGTGGAAGCGCAGTTGGCCGAACTCGAAGGACGTTGGCTCAAGGAAAAGGACACGGTGTCCAAGATCCTCGA GGTGCGTGGCAAGCTCGTCGCCGAATCAGCCAATGCGGATCAGACGGCCGCGGACGCCCTGCGCGCAGAATACACGCAGG CCATGAGCGAACTCGAGGCACTGCAGGGTGAGAACCCGCTGGTGCGTCCGTTCGTCGATGCGTCCATCGTCGGTGAAGTG ATCTCCGGCTGGACCGGCATCCCGGTCGGCAAGATGATGAGCGACGAACTGGGCACGATGCTCGAGCTCGAGAAGCACCT CGGCGCGCGTGTCATCGGTCAGGATCATGCGCTGGTGGATATCTCGCGTCGCGTGCGCACGTCGAAGGCCGGCATCGAAG ATCCGAACAAGCCGAAGGGCGTGTTCATGCTCGTCGGCCCGTCCGGCGTCGGCAAGACGGAAACCGCACTGGCCCTGTCC GACATGCTGTTCGGTGGTGAACGCAACATCGTCACCATCAACATGTCGGAGTTCCAGGAAGCCCACACCGTGTCCACGCT CAAGGGTTCGCCCCCGGGGTACGTGGGCTACGGCGAAGGTGGTGTGCTCACGGAAGCCGTGCGTCGTCGTCCGTACAGTG TCGTGCTGCTCGACGAAGTGGAGAAGGCACACCCCGATGTGCTCGAACTCTTCTTCCAGGTGTTCGACAAGGGCGTGATG GAAGACGGCGAAGGCCGTCAGATCGATTTCAAGAACACGATCATCATCCTGACCACGAACGCCGGCACCGATACGATCAT GAAGCTGACGGCCGATCCGGAAACGCTGCCGTTCCCGGATGCGATGGCCAAGGCCCTCAAGCCGGAACTCGACGCGGTGT TCAAGCCGGCGTTCCTGGGCCGCATGGTCATCGTGCCGTTCTACCCGGTGCGCGACGAGAACCTCAAGCAGATCGTCCGC CTCAAGATCGGCAAGATCTCGCGCCGTCTGCGCGAAACGCACAAGCTCACCCTGCAGCACGACGAAACGCTCATCAGCCA AGTGGCGGCGCGTTGCACGGAAGTGGAGAGCGGTGCCCGTAACGTCGACAACATTCTCAGCAACACGCTGCTGCCGGAAA TCTCCCGTCTGCTGCTGGCCTCGATGGCGGAAGGCACCCGTCCGAGCGCGCTCAAGGTGGGCGTGGCCGAAGACGGCGAC TTCACGTACGAAGCGGTGGTGTGA Protein sequence : MSVNLRGLIAKLNAPTRSAVEAAAGLCLSRTNYDVEIEHLFVKLLDSSDSDLAAILKHFGVNRSRLADDIARALDKLKTG NARTPSISPSVVNVLREAWVLGSVEYGAPRVRSGHVMLALLSVPELQRLSAEFTKEFEKIPADVLKKDFVTITASSAEAT AEIGSIDSVAAGASASSSGGGTAKAGGRTPNLDSYTVDLTANAKSGKIDQVLGRDFEVRQVVDILTRRRQNNPILVGEAG VGKTAVVEGFARRIVDGDVPPPLRNVRLLSLDLAMLQAGAGVKGEFENRLKGLIEEVKNSPTPIILFIDEAHTMIGAGGA AGQNDAANLLKPALARGELRTIAATTWSEYKKFFEKDPALSRRFQLVKVEEPTEDVCCIMMRAVVPSLEKHHTVHILDSG MEAAVRLSHRYLADRQLPDKAVSVLDTACARLALGQSATPGPVEDCKRILDDLALQDRVLNREQTAGADHRERLAGIAER RTQVEAQLAELEGRWLKEKDTVSKILEVRGKLVAESANADQTAADALRAEYTQAMSELEALQGENPLVRPFVDASIVGEV ISGWTGIPVGKMMSDELGTMLELEKHLGARVIGQDHALVDISRRVRTSKAGIEDPNKPKGVFMLVGPSGVGKTETALALS DMLFGGERNIVTINMSEFQEAHTVSTLKGSPPGYVGYGEGGVLTEAVRRRPYSVVLLDEVEKAHPDVLELFFQVFDKGVM EDGEGRQIDFKNTIIILTTNAGTDTIMKLTADPETLPFPDAMAKALKPELDAVFKPAFLGRMVIVPFYPVRDENLKQIVR LKIGKISRRLRETHKLTLQHDETLISQVAARCTEVESGARNVDNILSNTLLPEISRLLLASMAEGTRPSALKVGVAEDGD FTYEAVV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-175 | 48 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 4e-141 | 42 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 5e-141 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_002763390.1 | putative chaperone ClpB | VFG2076 | Protein | 0.0 | 53 |
| clpB | YP_002763390.1 | putative chaperone ClpB | VFG2084 | Protein | 3e-160 | 45 |
