Gene Information

Name : GAU_3530 (GAU_3530)
Accession : YP_002763042.1
Strain : Gemmatimonas aurantiaca T-27
Genome accession: NC_012489
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 4147577 - 4148539 bp
Length : 963 bp
Strand : -
Note : -

DNA sequence : 
ATGACCGGAGCCCGCCTCATCACACGGGTGCGCGAGCGCGCGGCCGTGCGTCGGTACAGTCCACGCACGGTGGAGGTGTA
TGTGCGCTGGATTGTCCGGTTCGTGCGATTCCATGGGATGCAGCATCCGTCGGCGCTGGGCGATAGTGCTGTCTCGGCAT
TTCTGACGTATCTGGCGAGCGAACGAAAGGTCGCGGCGTCCACGCAGAATCAGGCCTTGGCGGCATTGGCGTTCCTGTAC
GCCGAAGTACTGGGACAACCGCTTGGCGCGGTGCAGGGATTTCTGGTAGCCAAGGTTCCGCATCGGCTGCCCAATGTGCT
GTCGCGAGCTGCCGTGCGGCGGGTGCTTGTGCACATGCGAGGCACGCCGCACCTGATGGCTTCGCTCCTATATGGCACCG
GCCTGCGACTCAACGAGTGCTGTCAGCTACGAGTGAAGGACCTGGACCTCGATCGCAAGGAATTGCGCGTGCGCGCGGGC
AAGGGCGGGCGGGATCGGGTGACAATGGTTCCGGAGTCATTGATTGCACCGCTACGTGAGCACCTGCGTGCCGCGAAAGT
GCTGATGGCGCGCCGCGCCTCCGCTGGAGGTGGCTACGTCGCGCTGCCTGGGGCGATGGACCGCAAGGCAGCGGGCGCCA
GCCGGCAATGGGGTTGGTGCTGGGTGTTTCCCGCCGCGCGCGAATATCGTGACGCGTCCACGGGAGAGCGGCGTACACAT
CACCTGCACCACACGGTGCTGCAGCGCGCCGTGGCGGAAGCCGCCCGCCGCGCCGGTATCGGCCAGCGAGTAGGATGTCA
CACCTTCCGGCATTCGTTTGCGACGCACCTGCTGGAGGACGGCTACGACATCCGTACCGTGCAGGAGCTGTTGGGGCATC
GAGACGTGTCCACGACGATGATCTACACCCACGTGCTCAATCGGGGTGGCCGCGGTGTGCGGAGCCCGCTGGACGCGCCG
TAG

Protein sequence : 
MTGARLITRVRERAAVRRYSPRTVEVYVRWIVRFVRFHGMQHPSALGDSAVSAFLTYLASERKVAASTQNQALAALAFLY
AEVLGQPLGAVQGFLVAKVPHRLPNVLSRAAVRRVLVHMRGTPHLMASLLYGTGLRLNECCQLRVKDLDLDRKELRVRAG
KGGRDRVTMVPESLIAPLREHLRAAKVLMARRASAGGGYVALPGAMDRKAAGASRQWGWCWVFPAAREYRDASTGERRTH
HLHHTVLQRAVAEAARRAGIGQRVGCHTFRHSFATHLLEDGYDIRTVQELLGHRDVSTTMIYTHVLNRGGRGVRSPLDAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int1 YP_005160012.1 integrase Not tested Not named Protein 6e-54 52
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 7e-48 51
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 2e-66 50
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 3e-66 50
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 9e-66 50
intI YP_001844881.1 integrase Not tested AbaR20 Protein 4e-66 50
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 2e-66 50
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 3e-66 50
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 9e-66 50
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 4e-66 50
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 3e-66 50
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 9e-66 50
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 4e-66 50
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 3e-66 50
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 9e-66 50
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 4e-66 50
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 3e-66 50
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 9e-66 50
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 3e-66 50
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 3e-66 50
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 9e-66 50
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 3e-66 50
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 3e-66 50
intI1 AAK02045.1 integrase Not tested SGI1 Protein 9e-66 50
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 2e-66 50
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 3e-66 50
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 9e-66 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GAU_3530 YP_002763042.1 integrase VFG1028 Protein 1e-66 50