Gene Information

Name : GAU_2879 (GAU_2879)
Accession : YP_002762391.1
Strain : Gemmatimonas aurantiaca T-27
Genome accession: NC_012489
Putative virulence/resistance : Virulence
Product : OmpR family two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3385888 - 3386583 bp
Length : 696 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCCTCCTGCTTGCCGAAGACGATCCCCAGTTGCGCGACGCGATCACGCGTGGCCTGCGCGAGCTGGCGTTTGTCGT
GGATTCGGTGGGCGACGGCGAAACGGCCTTCACGATGGCCCTCGTGAACAGCTATGACGCGGTGATCCTCGACATCCTGA
TGCCAGGCATGGATGGCATCGCCATCTGCCGTGGTCTGCGGGCTCGTCAGATGGCCGTGCCGATTCTTCTGCTCACGGCC
CGCGACGCGGTCGACGAACGCATTCAGGGACTCGACGCCGGCGCCGACGACTATCTCACCAAGCCATTCCACTTCGGCGA
GCTGACGGCCCGTGTACGGGCACTGCTGCGTCGCATGAGTGTGGTGTTGCCTTCCACCATGGCGGTGGGCGATCTCGAGA
TCGACACCCGACTGCAGCAGGCACGACGCGACGGTGCCCTGCTGCCGCTGACGGCACGCGAATTCACGCTCCTCGCCTAT
CTGGCACGTCACGCTGGCCGCATCGTGAGTCGCGGAGAGCTGGCGGAGCACGTCTGGGACGAAAATCATGATCCCAACGC
AAACCTGATCGACGTGTACGTGAGCCGCCTCCGTCGGAAGGTCGATGGCGCCGGCCGCCGCCCGCTGCTGCATACCCGTC
GTGGACAGGGCGTGCTGTTGAGCGACGATGGCGATATCGCCGGCGAGCGCGGATGA

Protein sequence : 
MRLLLAEDDPQLRDAITRGLRELAFVVDSVGDGETAFTMALVNSYDAVILDILMPGMDGIAICRGLRARQMAVPILLLTA
RDAVDERIQGLDAGADDYLTKPFHFGELTARVRALLRRMSVVLPSTMAVGDLEIDTRLQQARRDGALLPLTAREFTLLAY
LARHAGRIVSRGELAEHVWDENHDPNANLIDVYVSRLRRKVDGAGRRPLLHTRRGQGVLLSDDGDIAGERG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-38 43
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-37 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GAU_2879 YP_002762391.1 OmpR family two-component response regulator BAC0083 Protein 1e-43 47
GAU_2879 YP_002762391.1 OmpR family two-component response regulator BAC0638 Protein 9e-36 45
GAU_2879 YP_002762391.1 OmpR family two-component response regulator BAC0111 Protein 6e-44 45
GAU_2879 YP_002762391.1 OmpR family two-component response regulator BAC0197 Protein 3e-39 43
GAU_2879 YP_002762391.1 OmpR family two-component response regulator BAC0347 Protein 6e-38 42
GAU_2879 YP_002762391.1 OmpR family two-component response regulator BAC0125 Protein 2e-38 41
GAU_2879 YP_002762391.1 OmpR family two-component response regulator NC_002516.2.879194.p Protein 4e-35 41
GAU_2879 YP_002762391.1 OmpR family two-component response regulator AE000516.2.gene3505. Protein 7e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GAU_2879 YP_002762391.1 OmpR family two-component response regulator VFG1389 Protein 9e-38 46
GAU_2879 YP_002762391.1 OmpR family two-component response regulator VFG0596 Protein 7e-38 42
GAU_2879 YP_002762391.1 OmpR family two-component response regulator VFG1390 Protein 2e-37 41