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Name : hsdR (GAU_0178) Accession : YP_002759690.1 Strain : Gemmatimonas aurantiaca T-27 Genome accession: NC_012489 Putative virulence/resistance : Unknown Product : type I restriction-modification system restriction subunit Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : 3.1.21.3 Position : 209016 - 212165 bp Length : 3150 bp Strand : - Note : protein synonym: type I restriction enzyme R protein DNA sequence : ATGCCTCGTTTCTCTGAATCGATCGTCGAAGACGCCGCCCTCGAGTGGCTGGCCGGGCTCGGTTATGAGGTCCGGCACGG TCCCGATATGGCAGCCGGAGAACCTGGCGCCGAACGCAGCGACCCCGGCTATCGCGACGTGGTCCTGGAACACCGGCTCC GCGCAGCCCTCCTCCGCCTCAATCCGTTGCTTCAGGCGGAGGCCATCGACGAGGCGTACCGCAAACTGACCCGCCTCGAC GCCCCGTCGGCCATGGACCGCAATCGCGCCATGCATCGCATGCTGCTGAATGGCGTGGAGGTCGAGTTTCGGCGTCCCGA CGGATCAATTGGCGGCGGACAGGTGCAGATCTTCGACTTCGACACGCCGACGAACAACAACTGGCTGGCCGTCAACCAGT TCTCCGTGGCCGAGGGACAACACCACCGCCGGCCTGACGTGGTGGTGTTTGTCAACGGACTGCCACTTGCCGTGCTCGAA CTCAAGAACGCCGCCGACGAAAACGCCACCATCTGGTCGGCTTGGCAGCAGTTGCAGACCTATCAGGCACAGATCCCGAC CCTGTTCACCAGCAATCTGGCTCTGGTGATTTCCGACGGGGTTCAGGCGCGCATCGGCGCGCTCGGCGCCGGCAAGGAAT GGTTCAAGCCTTGGCGCACGGTGAGCGGAACCACGAGTGCGCCGAGTTCACTGTCTGAGCTGGAAGTCTTGCTGCACGGT GTGTTCGAACACCGTCGCTTCCTCGACCTGCTGCACTACTTCGTGGCCTTCGAGCAGGAAGATGACGGCCCGCTCGTCAA AAAGTTGGCGGGATATCACCAGTATCACGCCGTCAACGTGGCGGTGGAAGAAACCCTGCGGGCCGCGCGCAGCGTCAACC CCGACCGTATTGCCGAAAACATCGGGCGCTATTCATCCGGTGAGCAACCCGGTGGGGAACCCGGCGACCGCCGCGTCGGC GTGGTGTGGCACACCCAGGGATCGGGGAAGAGTCTCACCATGGCCTTCTATGCCGGACGGGTGATCCTGCACCCCGGCAT GGCCAACCCCACGGTGGTGGTGATCACCGACCGCAACGATCTGGACGAACAACTGTTCGGCACCTTCGCGCGTTGCCGCA ACCTGCTGCGCCAGGAACCGGTGCAGGCCAAGGACCGCGCCGACCTGCGGAAGCAACTCGCCGTGAGCGCGGGTGGCGTG ATTTTCACCACCATCCAGAAGTTCATGCCCGATGAACGGGGCGACAAACATCCCCCGCTCTCGGACCGCCGCAATGTGAT CGTCATTGCCGACGAGGCGCACCGCAGTCAGTACGAATTCCACGATGGCTTCGCCGGACACATGCGCGATGCTTTGCCAA ACGCCTCGTTCGTGGGATTCACCGGAACACCGATCGAAAAAGCCGATGCCAACACGCGGCAGGTGTTCGGCGAATACATC AGCGTGTACGATATCCAGCGCGCGGTGGTCGACGGAGCGACTGTACCCATCTACTACGAAAGCCGCTTGGCAAAACTTGA GTTTGCAGAATCAGAGAAGTTGGGCATCGATTCGGCATTCGAGGAAGTCACGGAAGGAGAGGAAGTCGAGCGCAAGGAGC AACTCAAGAGCAAATGGGCGCAGCTCGAGGTCATCGCCGGCGCCGACACGCGACTCGATCTCATTGCCCGGGATATCGTG GATCACTTCGAGCGCCGCAACGAGGTGCTCGACGGCAAGGCCATGATCGTGGTCATGAGTCGACGCATTGCGGTGGCGTT GTACAACAGAATTGTCGCGCTGCGTCCTGAATGGCACAGTGATCGCAACGACGAAGGACTGCTGAAGATCGTCATGACCG GATCGGCGAGCGACCCCGTCGACTGGCAGCCTCACATCCGCAACAAGACTGACCGCGAGGCCCTCGCCACCCGATTCCGC GATGGATCGAGTGGATTTCGACTCGTCATCGTGCGCGACATGTGGCTCACGGGCTTCGACTGCCCGAGCCTCGCCACGAT GTACGTGGACAAGCCGATGCGAGGCCACGGGCTCATGCAAGCCATCGCCCGAGTGAATCGCGTATTCAAGGACAAACCGG GTGGGCTCGTGGTGGACTATCTGGGTCTTGCCGATGCGCTCAAGAGTGCACTCGCCACCTACACTGAAGCAGGAGGCACG GGCAAGACGGCACTCGATCAGGAAGAGGCCGTGGCCGTAATGTTGGAGAAGCATGAGATCTGTGTCGGCCTATTCCACGG TTTTGACCGTAGCGCGTGGTATGTTGGCACGGCGCAGCAGCGACTGTCCCTTTTGCCGGCGGCTCAGGAGCATGTGCTGG CACTTCCAGACGGCAAGGAGCGCCTCATGCGGCATGTCAGCGAACTGACGCGCGCCTTTGCCTTGGCCGTGCCTCACGAC ACCGCCATGCACATTCGCGACGATGTGGGATTCTTCCAGGCTGTTCGGGCTGTGCTGGCCAAGAACGAGGTGGGCAGAGC TCGACCGAGAAGCGATGTGGAACACGCCATTCGGCAGATCGTTTCCAAGGCGCTCGTGTCGGACGAAGTCATCGACGTAT TCACCGCGGCGGGGCTCAAGAAGCCGGATATCTCGATTCTCTCCGATGAGTTTCTGGCGGAGGTGCGTGGCATGCCGCAC CGCAATCTGGCCGTGGAGCTGTTGCAGAAACTGCTGAAAGGAGAAATCCGGACCCGCTCACGGCGCAACGTAGTGCAGGC GCGCTCGTTTGCCGGCCTGCTGGAGCAGGCGCTGCGCCGGTATCAGAACCGGGCGGTGGAAACCGCACAAATCATCGAAG AACTCATCAAGCTGGCCAAGGACATGCGGGCCGCCAACGCCCGCGGCGAGGCGCTTGGGCTCACCGACGATGAACTGGCG TTTTACGACGCGCTCGAAGTGAACGACAGCGCCGTTCAGGTGCTCGGAGACGAGCAACTGCGGGTCATTGCCCGTGAACT CGTAGCCACAATCCGAAAGAATGTGTCGATCGACTGGGCCATCCGCGACAACATGCGCGCGCAATTGCGCGTGTACGTCA AACGCATCCTCCGCAAGTACGGCTATCCACCTGACAAACAGGAGCGGGCCACGCAGACGGTGTTGGAGCAGGCGGAATTG CTAAGCAGTGAGTGGGCGATCGCTGCGTGA Protein sequence : MPRFSESIVEDAALEWLAGLGYEVRHGPDMAAGEPGAERSDPGYRDVVLEHRLRAALLRLNPLLQAEAIDEAYRKLTRLD APSAMDRNRAMHRMLLNGVEVEFRRPDGSIGGGQVQIFDFDTPTNNNWLAVNQFSVAEGQHHRRPDVVVFVNGLPLAVLE LKNAADENATIWSAWQQLQTYQAQIPTLFTSNLALVISDGVQARIGALGAGKEWFKPWRTVSGTTSAPSSLSELEVLLHG VFEHRRFLDLLHYFVAFEQEDDGPLVKKLAGYHQYHAVNVAVEETLRAARSVNPDRIAENIGRYSSGEQPGGEPGDRRVG VVWHTQGSGKSLTMAFYAGRVILHPGMANPTVVVITDRNDLDEQLFGTFARCRNLLRQEPVQAKDRADLRKQLAVSAGGV IFTTIQKFMPDERGDKHPPLSDRRNVIVIADEAHRSQYEFHDGFAGHMRDALPNASFVGFTGTPIEKADANTRQVFGEYI SVYDIQRAVVDGATVPIYYESRLAKLEFAESEKLGIDSAFEEVTEGEEVERKEQLKSKWAQLEVIAGADTRLDLIARDIV DHFERRNEVLDGKAMIVVMSRRIAVALYNRIVALRPEWHSDRNDEGLLKIVMTGSASDPVDWQPHIRNKTDREALATRFR DGSSGFRLVIVRDMWLTGFDCPSLATMYVDKPMRGHGLMQAIARVNRVFKDKPGGLVVDYLGLADALKSALATYTEAGGT GKTALDQEEAVAVMLEKHEICVGLFHGFDRSAWYVGTAQQRLSLLPAAQEHVLALPDGKERLMRHVSELTRAFALAVPHD TAMHIRDDVGFFQAVRAVLAKNEVGRARPRSDVEHAIRQIVSKALVSDEVIDVFTAAGLKKPDISILSDEFLAEVRGMPH RNLAVELLQKLLKGEIRTRSRRNVVQARSFAGLLEQALRRYQNRAVETAQIIEELIKLAKDMRAANARGEALGLTDDELA FYDALEVNDSAVQVLGDEQLRVIARELVATIRKNVSIDWAIRDNMRAQLRVYVKRILRKYGYPPDKQERATQTVLEQAEL LSSEWAIAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 49 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 46 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 46 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 46 |
