|
Name : clpC (GAU_1584) Accession : YP_002761096.1 Strain : Gemmatimonas aurantiaca T-27 Genome accession: NC_012489 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1898904 - 1901411 bp Length : 2508 bp Strand : + Note : - DNA sequence : ATGAACGGCTACAACTTCACCGAGCGGGTGCGGAAGGTCCTGGCCATGGCGCGCGAAGAAGCGGCGCGCCTGCACCACGA ATACGTGGGCACCGAGCATATCCTGCTGGGCCTCATCCGCGAGGGTGAGGGGGTTGCGGCAGCAGTGCTGCAGAACCTCA ACGTCGATCTCGACGACGTCACGCTGAAAATCGAGGAGACGGTCAAGAAGGGGAAGGCGGCGCAGGCCACCGGCCCCGAT TTGCCGTACACATCCCGCGCCAAGAAGGTGCTCGAGCTGGCCATGGCCGAGGCGCGCGATCTCAATCACAGCTACGTCGG CACCGAACACCTGCTCCTGGGCCTGCTCCGTGAGGAGAAGGGCATTGCCGCGCAGGTGCTCACGGACGCCGGCGTGAATC TCGAGGCCGCGCGCGCGGAAACGCTGCGCCTGCTGGGCACCGAGATGCCGCAGACCGGGGAGAAGCCGCAGGCCGAGAAG GCTGGCACGGTTCCGCCGGCCGCTGCACCGGCCAAGGGCGACAAGAAGTCCAAGACGCCGGCGCTCGATCACTTCTGCCG CGACCTGACGCAACTGGCAGCCGAAGGCCAGCTCGATCCGACGATTGGCCGCGCCAAGGAAATCGAGCGCGTCATGGAAG TGCTGTCACGCCGCAAGAAGAACAACCCGGTGCTCATCGGCGAACCCGGTGTGGGCAAGACGGCCATCGTGGAAGGGCTG GCACAGCTCATCTCGGCCAACGACTGCCCGGATTCGCTGCGCGACCATCGGGTGCTTTCACTCGATATGGCTGCGGTGAT TGCCGGTACCAAGTACCGCGGTCAGTTCGAAGAGCGTCTCAAGGCGGTGATGAACGAGATCGCGCAGAACAAGCAGATCA TTCTGTTCATCGACGAATTGCACACGCTGGTCGGCGCTGGTGCGGCCGAAGGCGCGATCGATGCGAGCAACATGCTGAAG CCGGCGCTTGCGCGCGGTGAGCTGCAGTGTGTGGGCGCGTCGACGCTCAACGAATACCGCAAGTACATCGAGAAGGATGG CGCGCTCGAGCGTCGTTTCCAGACCGTCGTGGTGGAACCGCCTTCAATCGACGAGACCGTGCAGATCCTGCAGGGGCTCA AGAAGAAGTACGAAGACCATCACCGCGTGAACATCCCGGATGCGACGCTGCTGGCCGCTGCGAAGCTGTCCGAGCGGTAC ATCACGGACCGCTTCCTGCCGGACAAGGCGATCGACGTGATCGACGAGGCGGGAGCACGGGCACGTCTGGCGGCGCAGGT GCCGCCGGCCGAGGTGGCCGATCTCAAGGAACAGCTCGAGAAGATCAATACCGAGAAGGAAGCGGCGGTCCGCGATCAGA ACTTCGAGCGCGCGGCGTCGCTGCGTGACAACGAACGCGAGTTGCAGGCCGAGATCCGGCGCAAGCAGGAAGAGTGGGAG CAGCGGCGCCAGTCGTTCCGGCCCACGCTCGGCGAAGAGGAAATCGCGTTCATCGTCAGCCGCTGGACCGGTATCCCGGT GACGCGCCTGCAGGAGGCGGAAACGTCACGCCTGCTGCGCATGGAGGACGAGTTGCACGGCACGGTGGTGGGGCAGGATG AGGCCATCAAGGCACTCGCCCGCTCCATTCGTCGAAGCCGCGCTGGGCTCAAGGATCCGCGCCGTCCGATCGGCTCGTTC ATCTTCTCGGGGCCCACGGGTGTCGGCAAGACCGAGCTGGCCCGTGCACTGGCCAAGTTCCTGTTCGCCGACACGTCAGC GCTCATCCGCGTGGACATGAGCGAGTACATGGAGAAGTTCTCCGTCTCGCGACTCATCGGCGCGCCCCCGGGTTACGTGG GGTATGAAGACTCTGGCACGTTGACCAAGGCAGTGCGGCGCAAGCCGTACAGCGTGGTCCTGCTCGACGAAATCGAGAAG GCGCATCCGGATGTGTTCAACATCCTGCTGCAGGTGCTCGATGAAGGACATCTCACGGACAACTACGGCCGCGTGATCGA CTTCAAGAACACCGTGGTCATCATGACCTCGAACGTCGGTGCCAAGGACATCACGAAGGGCAAGTCGCTGGGCTTCGCCA CGAAGGATTCGCGCGGAGATTTCGAGCGGATTGCCGAAAAGGTGAAGGAGGAGATGGGCCGGGTCTTCAATCCGGAATTC CTGAACCGCCTGGACGACGTGATCGTGTTCCACCCGCTGGGCAAGGAGCACATCGGACAGATCGTGTCCATTCTGTTCGG CGACGTGCAGAAGCGCTTGGCTGAGGAGGAGCTCACGATCAAGCTGACGCCCGAGGCCACCGAGTTCCTGGTGGATCATG GGCACGACGAGCACTTCGGTGCCCGTCCGCTCAAGAGGGCGATCCAGCGGTATGTGGAAGACCCGCTGTCTGAAAAGATC CTGACGGGTGAGTATTCGCGTGGGGACGAAATCGAGGTGGGGGTGTCGACCACCGAGAAGGAAAAGCTGGAATTCCGCGT CCTGACGCCCACCCCGCAGGCATCCTGA Protein sequence : MNGYNFTERVRKVLAMAREEAARLHHEYVGTEHILLGLIREGEGVAAAVLQNLNVDLDDVTLKIEETVKKGKAAQATGPD LPYTSRAKKVLELAMAEARDLNHSYVGTEHLLLGLLREEKGIAAQVLTDAGVNLEAARAETLRLLGTEMPQTGEKPQAEK AGTVPPAAAPAKGDKKSKTPALDHFCRDLTQLAAEGQLDPTIGRAKEIERVMEVLSRRKKNNPVLIGEPGVGKTAIVEGL AQLISANDCPDSLRDHRVLSLDMAAVIAGTKYRGQFEERLKAVMNEIAQNKQIILFIDELHTLVGAGAAEGAIDASNMLK PALARGELQCVGASTLNEYRKYIEKDGALERRFQTVVVEPPSIDETVQILQGLKKKYEDHHRVNIPDATLLAAAKLSERY ITDRFLPDKAIDVIDEAGARARLAAQVPPAEVADLKEQLEKINTEKEAAVRDQNFERAASLRDNERELQAEIRRKQEEWE QRRQSFRPTLGEEEIAFIVSRWTGIPVTRLQEAETSRLLRMEDELHGTVVGQDEAIKALARSIRRSRAGLKDPRRPIGSF IFSGPTGVGKTELARALAKFLFADTSALIRVDMSEYMEKFSVSRLIGAPPGYVGYEDSGTLTKAVRRKPYSVVLLDEIEK AHPDVFNILLQVLDEGHLTDNYGRVIDFKNTVVIMTSNVGAKDITKGKSLGFATKDSRGDFERIAEKVKEEMGRVFNPEF LNRLDDVIVFHPLGKEHIGQIVSILFGDVQKRLAEEELTIKLTPEATEFLVDHGHDEHFGARPLKRAIQRYVEDPLSEKI LTGEYSRGDEIEVGVSTTEKEKLEFRVLTPTPQAS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_002761096.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 57 |
| clpC | YP_002761096.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0080 | Protein | 1e-154 | 52 |
