Gene Information

Name : Lm4b_02397 (Lm4b_02397)
Accession : YP_002759083.1
Strain : Listeria monocytogenes Clip81459
Genome accession: NC_012488
Putative virulence/resistance : Virulence
Product : ferrichrome ABC transporter (ATP-binding protein) FhuC
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2469833 - 2470624 bp
Length : 792 bp
Strand : -
Note : -

DNA sequence : 
ATGAAATCAGCATTAGAACTAAAAAATGTTTCTTTCTCACGTAAAAGAGATTTCGAAATGAAAAACGTGAGCGCGAGTAT
TCCAGAAGGGAAAATCACTACGCTTATCGGTCCAAACGGCTCGGGAAAATCGACTATGCTGCGTTTGATGATGCGCCTTT
TGACACCGGATAGCGGGGAGATTTTCTTAAATGATAAAAACATTACTGAAATCCCATCTAAAGATTTAGCGAAAAAAATG
ACGATGTTATCACAAGCTCCAGAAGGGTTGGTAGATGTGATGGTGCATGATTTAGTGGCGTATGGCCGTTTGCCGCACCG
AAGCTGGCTCTCCACTCTGCAAGAGGAGGACGAGGCGGTCATTCACTGGGCTATTAAAGTGTGCAACTTAGAAGAATTGG
CTTATCGCCCGCTACATTCGTTATCAGGCGGAGAAAGACAACGCGCTTGGCTCGCCATGGCTCTTGCACAAAAAACACCG
ATTTTATTACTAGATGAGCCCACGACTTATTTAGATATTGCGCATCAACTGGAGCTTTTAGATTTACTCGTGCATTTAAA
TAAAGAATATAATTTAACTATCGTGCTCGTTTTACATGATTTAAATCAGGCAGCAATTTACAGTGACCATGTTTTTGTAT
GCGAAAATGGACAATTAGTCAAAGATGGCTCGCCTATAGAAGTTTTCACGACAGAGCTTCTTCGCGAGGTTTTTCATATT
ACGGCGGATATTACCGAAAAAGACGGAAAGCAGCATATTCATCCACTTGCTTCGACTCGTTTTGAATATTAA

Protein sequence : 
MKSALELKNVSFSRKRDFEMKNVSASIPEGKITTLIGPNGSGKSTMLRLMMRLLTPDSGEIFLNDKNITEIPSKDLAKKM
TMLSQAPEGLVDVMVHDLVAYGRLPHRSWLSTLQEEDEAVIHWAIKVCNLEELAYRPLHSLSGGERQRAWLAMALAQKTP
ILLLDEPTTYLDIAHQLELLDLLVHLNKEYNLTIVLVLHDLNQAAIYSDHVFVCENGQLVKDGSPIEVFTTELLREVFHI
TADITEKDGKQHIHPLASTRFEY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 5e-40 49
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 6e-44 48
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-44 48
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-44 48
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 6e-44 48
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-37 48
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 1e-38 45
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 1e-38 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lm4b_02397 YP_002759083.1 ferrichrome ABC transporter (ATP-binding protein) FhuC BAC0164 Protein 3e-40 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lm4b_02397 YP_002759083.1 ferrichrome ABC transporter (ATP-binding protein) FhuC VFG1042 Protein 3e-40 49
Lm4b_02397 YP_002759083.1 ferrichrome ABC transporter (ATP-binding protein) FhuC VFG0925 Protein 2e-34 43