Gene Information

Name : Lm4b_02208 (Lm4b_02208)
Accession : YP_002758897.1
Strain : Listeria monocytogenes Clip81459
Genome accession: NC_012488
Putative virulence/resistance : Virulence
Product : ferrichrome ABC transporter (ATP-binding protein)
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2275649 - 2276428 bp
Length : 780 bp
Strand : -
Note : -

DNA sequence : 
ATGGAAGTAAGGGACGTTAATTTTAGTTATAATGGAACGGATGCGATTTTAAAAAATGTCTCCTTTACTATCCAGAAAAA
TAAAATCAATACGATTGTTGGGCCAAATGGTAGTGGGAAATCTACTTTATTAGAAATTTTGGCTAGACTTCTTTCGCCTG
ATTCTGGGGATGTTTTACTAGAAGGGAAATCGATTTTTGAATGGAAAGCAAAAGAATTTGCGCAAAATGTAGCGATTGTT
CATCAAAATAACGTTCTTCCGAATGAACTAACGGTGAAGGAATTGCTTTACTTTGGTCGTCTACCTTATAAAAATTGGCG
AATGACTCGGACGAAGGCGGATGATCTGGCTGTTGAGCAGGCTTTGATGCAAACGGAGCTAACTGAAAAAGCGGAGAAAT
TTGTTGATAGTCTTTCTGGAGGAGAGCGGCAGCGTGTTTTTATAGCAACAGCATTGGTTCAAGATACACCTATTTTGCTG
TTGGACGAGCCGACGACATTTCTGGACATGTATTTTCAACTAGAAATTTTAGAGTTAGTAAAACGGTTAAATCAAGAAAA
AAATTTGACTATTGTAATGATTTTGCATGACTTAAACCAAGCGTTGATGTATAGTGACCATTTGATTGTGATGAAAAATG
GGAAAGTGGTTGCAAAAGGAGTACCAGGAGAATTACTAACAACGGAGCTGATTGCTGAAACTTATGGTGTAGTTGCGAAG
GTTTTAAACGATGCGAACACTGGGAAATACATTGTTCCTCAAAAGCGAAAGGAGTTTTAA

Protein sequence : 
MEVRDVNFSYNGTDAILKNVSFTIQKNKINTIVGPNGSGKSTLLEILARLLSPDSGDVLLEGKSIFEWKAKEFAQNVAIV
HQNNVLPNELTVKELLYFGRLPYKNWRMTRTKADDLAVEQALMQTELTEKAEKFVDSLSGGERQRVFIATALVQDTPILL
LDEPTTFLDMYFQLEILELVKRLNQEKNLTIVMILHDLNQALMYSDHLIVMKNGKVVAKGVPGELLTTELIAETYGVVAK
VLNDANTGKYIVPQKRKEF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-46 46
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 6e-45 44
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-45 44
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 7e-45 44
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 7e-45 44
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 6e-45 43
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 6e-45 43
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-44 42
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-44 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-44 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-44 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-44 42
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 3e-42 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lm4b_02208 YP_002758897.1 ferrichrome ABC transporter (ATP-binding protein) BAC0164 Protein 2e-42 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lm4b_02208 YP_002758897.1 ferrichrome ABC transporter (ATP-binding protein) VFG0925 Protein 6e-45 43
Lm4b_02208 YP_002758897.1 ferrichrome ABC transporter (ATP-binding protein) VFG1042 Protein 2e-42 41