Gene Information

Name : ACP_3235 (ACP_3235)
Accession : YP_002756238.1
Strain : Acidobacterium capsulatum ATCC 51196
Genome accession: NC_012483
Putative virulence/resistance : Unknown
Product : ISAca2, transposase istB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 3748629 - 3749411 bp
Length : 783 bp
Strand : +
Note : identified by similarity to SP:P15026; match to protein family HMM PF01695

DNA sequence :
ATGTCGCTACAGTCTGAACGTCTGCTCAACCACATGCAGCGGCTGCGCTTGTCGCACCTGCCTAACTGCTATGAAGCCAT
CGCCGAAGAGGCTTCAGCCAAGGACCTGCCCTATCTGGATTTCCTGGAGCAGGCCCTGGAAGCCGAGAGCCAGGCCAAGC
ACACGCGCAACGTGCGCCTGAAGACCCAATGGGCGCATTTCCCCTACAACAAGGGCCTGGACCAGTTCGATTTCGACTTC
CAGCCCTCGGTCGACGAGCGCAAACTGCGCGAGCTGGCCGGTCTGGCGTTTCTGGAACGTAAGGAGAACGTGCTGCTGCT
CGGCCCGCCCGGAGTGGGTAAAACGCATCTGGCCATCGCGCTCGGCACCGAGGCCATCGTGGCCGGAAACACGGTCTACT
TCGTCACCGTGCAGGACCTGGTGCAGCAGTTCCAGCGCGCCCGCGACGAGAACAAGCTCAAGGAGCGGATGACCCTGCTG
GTCAAGCCCAAGCTGCTGATCCTGGATGAAATGGGCTATCTGGCGCTGGATCCCTTCGCCGCCACCTGCCTGTTCCGGCT
GGTCAGCGAGCGCTATGAAAAGGGATCGATCATCGTTACCTCAAACAAGAGCTATGGCGACTGGGGCACGATCTTCGCTG
ACAACGTGATTGCGTCGGCGATTCTGGATCGTCTGCTGCACCACTCCACCACCATCAACATCAAGGGCGAGAGCTACCGG
CTCAAGGACAAGAAGAAGGCCGGGGTGATCGCCGCCAAAACCCCCAACAGGGAAGGAGCCTGA

Protein sequence :
MSLQSERLLNHMQRLRLSHLPNCYEAIAEEASAKDLPYLDFLEQALEAESQAKHTRNVRLKTQWAHFPYNKGLDQFDFDF
QPSVDERKLRELAGLAFLERKENVLLLGPPGVGKTHLAIALGTEAIVAGNTVYFVTVQDLVQQFQRARDENKLKERMTLL
VKPKLLILDEMGYLALDPFAATCLFRLVSERYEKGSIIVTSNKSYGDWGTIFADNVIASAILDRLLHHSTTINIKGESYR
LKDKKKAGVIAAKTPNREGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 1e-35 45
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 6e-51 44
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 6e-51 44
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 6e-51 44
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 8e-51 44
api84 CAF28558.1 putative transposase Not tested YAPI Protein 6e-51 44
unnamed CAA21402.1 - Not tested HPI Protein 8e-51 44
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 6e-51 44
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 5e-50 44
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 6e-51 44
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 8e-51 44
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 8e-51 44
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 1e-50 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ACP_3235 YP_002756238.1 ISAca2, transposase istB VFG1460 Protein 6e-36 45
ACP_3235 YP_002756238.1 ISAca2, transposase istB VFG1627 Protein 3e-51 44
ACP_3235 YP_002756238.1 ISAca2, transposase istB VFG1606 Protein 3e-51 44
ACP_3235 YP_002756238.1 ISAca2, transposase istB VFG1663 Protein 3e-50 44
ACP_3235 YP_002756238.1 ISAca2, transposase istB VFG1515 Protein 3e-51 44