Gene Information

Name : copR (ACP_2862)
Accession : YP_002755878.1
Strain : Acidobacterium capsulatum ATCC 51196
Genome accession: NC_012483
Putative virulence/resistance : Virulence
Product : transcriptional activator protein copR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3340040 - 3340717 bp
Length : 678 bp
Strand : +
Note : identified by similarity to SP:Q02540; match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGAAGTTGCTTGTCGTCGAAGACGATGTGGCGAATGCCCAGTTTCTTGAGCGCGCTTTAGCAGAGAACGGCTACAACAT
TGATCTTGCTCACAATGCCGCGGCGGCCGAGCGGCTGGCGCTGGAGGGTGGGCACGCCGTCATCATTCTGGATCTCGGAT
TGCCGGACGAGGATGGCCTTTCCCTGATCACTCGCCTCAAGGCGGGCGGAGTGAAGGCTCCGGTGCTTATCTTGTCTGCC
CGTCGCGCGGTTGATGACCGGGTGCGCGGTCTGGAACAGGGGGGCGATGACTATCTCACCAAGCCCTATGCCTTGCCCGA
GTTGCTGGCTCGCGTGCGCAATCTGCTGCGCCGCAATAGCAGTGCGCCCGATACTTCGACCGTGCTGCGCGTGCTTGATC
TTGAAATGAACCTGCTGCGCCGCGAGGCCACGCGCGCCGGGGAATTATTGCAGTTGACCACGCAGGAGTTTGCGTTGCTG
GAGTTTCTCTGCCGCCACGCGGGGCGCGTCGTGACGCGATCCATGATTCTGCAGCAGGTTTGGGGCATGCGCATTCAGCC
GGATACTAACGTGGTCGATGTGCATATCTACAGGCTGCGCAGCAAGGTTGAGCGGCCAGATCTGCCGCAGTTGATTCGTA
CCATTCGAGGAGTGGGGTATGTCCTCCGCGATAAATAA

Protein sequence : 
MKLLVVEDDVANAQFLERALAENGYNIDLAHNAAAAERLALEGGHAVIILDLGLPDEDGLSLITRLKAGGVKAPVLILSA
RRAVDDRVRGLEQGGDDYLTKPYALPELLARVRNLLRRNSSAPDTSTVLRVLDLEMNLLRREATRAGELLQLTTQEFALL
EFLCRHAGRVVTRSMILQQVWGMRIQPDTNVVDVHIYRLRSKVERPDLPQLIRTIRGVGYVLRDK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_002755878.1 transcriptional activator protein copR BAC0083 Protein 2e-36 49
copR YP_002755878.1 transcriptional activator protein copR BAC0125 Protein 2e-34 47
copR YP_002755878.1 transcriptional activator protein copR BAC0111 Protein 6e-36 46
copR YP_002755878.1 transcriptional activator protein copR BAC0197 Protein 5e-36 46
copR YP_002755878.1 transcriptional activator protein copR BAC0638 Protein 2e-28 46
copR YP_002755878.1 transcriptional activator protein copR BAC0347 Protein 4e-32 45
copR YP_002755878.1 transcriptional activator protein copR BAC0308 Protein 4e-33 44
copR YP_002755878.1 transcriptional activator protein copR BAC0487 Protein 4e-24 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_002755878.1 transcriptional activator protein copR VFG1389 Protein 8e-26 46
copR YP_002755878.1 transcriptional activator protein copR VFG0473 Protein 2e-25 45
copR YP_002755878.1 transcriptional activator protein copR VFG1390 Protein 1e-31 43
copR YP_002755878.1 transcriptional activator protein copR VFG0596 Protein 7e-28 41