|
Name : lysS (ACP_0278) Accession : YP_002753421.1 Strain : Acidobacterium capsulatum ATCC 51196 Genome accession: NC_012483 Putative virulence/resistance : Virulence Product : lysine--tRNA ligase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 330115 - 331791 bp Length : 1677 bp Strand : - Note : identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 DNA sequence : GTGTTTGAGTCCGATTTCGAGCGTAACCTCTTCACGCTCCGCCAGGAAAAACTGAAGCAGATCGAAGCCCTGGGCCAGGC GGCCTATCCCAACAGCTTTGCGGCCACGCATACCGTGCCCGAAATATGGGCGAGGTATCACGACGTCAGCGGGGAGCAGT TGGAGGCCGAGCGCGTTCCCGTGGCCATTGCCGGCCGCATGATGGCCAACCGCCCGGCGGGCAAGGCCGGCTTTGCGCAT CTGCAGCAAGGTGGCGAGCGCTTGCAACTTTATGTCCGCAAGGATGCCGTGGGCGACGCGGCCTTTGACGTGTACAAGCT GCTCGACCTGGGCGATCACATCGGCGTGACCGGCTACCTGTTCCGCACGCGGACAAACGAGTTGAGCGTGCATGTGGAGA CGCTGACCTTTCTGGCGAAGGCCATGCTGGCGATGCCGGACAAGTATCACGGCCTGGAAGACGTGGAGCTGCGCTACCGC CAGCGGTATGTGGATCTGTTTATGAATCCTGAGGTGCGCGAGGTATTTGTGAAGCGCGCCAAGGTGCTGGCTGCTACGCG CAAGTTTTTTGACAGCCGCGGCTACGTCGAAGTGGAAACGCCGATGATGCAGCCCATCGCGGGCGGCGCGGCGGCGCGGC CCTTCATCACGCATCACAATGCCCTCGATATTGATCTTTATCTGCGCATTGCGCCGGAGCTTTATCTGAAGCGCCTCGTG GTGGGTGGGCTCGATCGCGTGTATGAGATCAACCGCAACTTCCGCAACGAGGGCATCTCGACGCAGCACAATCCCGAGTT CACGATGCTGGAGTTTTACCAGGCCTACGCGAATTATCACGACCTGATGAAGCTGACCGAGGAGTTCATCACGTTCGTGG CGCAGGAGGTGAACGGGACGACGGTGACCGAATTCCCGATTCCCAAGGGGCCGCGCGCGGGCGAAGTGGTGGAGATTGAC CTCGCGAAGTGGCGCCGCTTCACGATGCGGGAGGCGATCATTGAGTTTTGGCCGGATGAGTTTGGAGCGAAGCCCACCGA AGCGGAGATAGCCTTTTCGATTGATCAAGTTTTGATGCGTGCCATCAGAATGATGCACGCGCACTTTCCAAATTGGGCAA CGGTGTTTCCACCGGAAACTGAAGAGCAAGGTTGGGCCGAAGCCGAGCATGCACTTAAGAAATTGACTATACAGATACAG ATCTTGCTTCAACATGTTGAAAGAGGGCTTCCCCATGGGAAGGCTATTTCAGAATTATTTGAGCTACTTGCCGAAGAGCA TCTCATCGAACCCACGATCATCTACGACTTCCCTCTTGCGGTTTCGCCGCTCTCGAAGCAGAAGCCCGATGAGCCGGAGT GGGTGGAGCGCTTTGAGTTTTACATTGGCGGATTTGAGCTGGGCAATGCCTTCAGCGAACTGAATGACCCGAGCGAGCAG CAGCGCCGCTTTGAAATGCAGCTTGCCGAGCGCGAACGCGGCGATGACGAGGCTCACCAGATGGACGCCGACTATGTGCG GGCGCTGGGCTATGGGCTGCCGCCGACCGGCGGCGAAGGCATCGGCATTGACCGGTTGACGATGGTTCTGACCGGCTCGC GCTCGATTCGCGATGTAATTCTCTTTCCGCTGCTGCGCCCGCAGGTGCGGGAAGCTGAGAAAACGGAAGAAGAGTAA Protein sequence : MFESDFERNLFTLRQEKLKQIEALGQAAYPNSFAATHTVPEIWARYHDVSGEQLEAERVPVAIAGRMMANRPAGKAGFAH LQQGGERLQLYVRKDAVGDAAFDVYKLLDLGDHIGVTGYLFRTRTNELSVHVETLTFLAKAMLAMPDKYHGLEDVELRYR QRYVDLFMNPEVREVFVKRAKVLAATRKFFDSRGYVEVETPMMQPIAGGAAARPFITHHNALDIDLYLRIAPELYLKRLV VGGLDRVYEINRNFRNEGISTQHNPEFTMLEFYQAYANYHDLMKLTEEFITFVAQEVNGTTVTEFPIPKGPRAGEVVEID LAKWRRFTMREAIIEFWPDEFGAKPTEAEIAFSIDQVLMRAIRMMHAHFPNWATVFPPETEEQGWAEAEHALKKLTIQIQ ILLQHVERGLPHGKAISELFELLAEEHLIEPTIIYDFPLAVSPLSKQKPDEPEWVERFEFYIGGFELGNAFSELNDPSEQ QRRFEMQLAERERGDDEAHQMDADYVRALGYGLPPTGGEGIGIDRLTMVLTGSRSIRDVILFPLLRPQVREAEKTEEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 5e-105 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002753421.1 | lysine--tRNA ligase | VFG1668 | Protein | 3e-105 | 44 |
