Gene Information

Name : ACP_0232 (ACP_0232)
Accession : YP_002753376.1
Strain : Acidobacterium capsulatum ATCC 51196
Genome accession: NC_012483
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 285022 - 285726 bp
Length : 705 bp
Strand : +
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
TTGCAAGTACTGCTGGTGGATGACGACGGAGCGCTGACGCGGTTTCTGGAGCGCGGTCTGGCCGAGGAAGGATATACGGT
GACGTCGGCGGCCGATGGCGAGGCGGCGCTGGAGCTGCTCGAAGCAATGCTGCCCGACCTGGTGGTGCTCGATCTGAACC
TGCCCCGGCGGGATGGAACCGAGGTGCTGGCGGCCTTGCGGGCACGGCACGCGGAGGTTCCGGTGCTGGTGCTGACCGGG
CGCAGCGAGGTGGCCTCGCGAGTGCGCTGTCTGGACCTGGGCGCGGACGATTGCCTGCTGAAGCCTTTTTCGCTGGCCGA
GTTGAAGGCGCGCTGCCGGGCGCTCTTGCGCAGGCGCGGAGGGACAGCGCACCTGGTGCTGCGCCATGAAGATCTCGAAG
TCAACCGCGTGGAGCACACGGTACAGCGGGGAGGACGCGAGGTTGCGTTGACCCGCACCGAATATGCGCTGCTCGAATGC
CTGATGCTGCATCGGGGCCGGCCTGTTTCGCGGGCGCGGCTGCTTGAGGAGGTCTGGCACGAGAGCGCGGAGAATGGCAC
CAACATCGTGGATGTCTATGTGAATTATCTGCGGCGCAAGCTGGGTGACGAAGGACCGGCGCCACTGATCCAGACGGTGC
GCGGGTTGGGCTATGCCGTGGGCATGCCGGTGGCGCGGCGCGAGACGTTCTGGACCCATGCATAA

Protein sequence : 
MQVLLVDDDGALTRFLERGLAEEGYTVTSAADGEAALELLEAMLPDLVVLDLNLPRRDGTEVLAALRARHAEVPVLVLTG
RSEVASRVRCLDLGADDCLLKPFSLAELKARCRALLRRRGGTAHLVLRHEDLEVNRVEHTVQRGGREVALTRTEYALLEC
LMLHRGRPVSRARLLEEVWHESAENGTNIVDVYVNYLRRKLGDEGPAPLIQTVRGLGYAVGMPVARRETFWTHA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-18 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ACP_0232 YP_002753376.1 DNA-binding response regulator BAC0197 Protein 1e-22 41
ACP_0232 YP_002753376.1 DNA-binding response regulator BAC0125 Protein 3e-24 41
ACP_0232 YP_002753376.1 DNA-binding response regulator BAC0308 Protein 6e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ACP_0232 YP_002753376.1 DNA-binding response regulator VFG1390 Protein 5e-28 46
ACP_0232 YP_002753376.1 DNA-binding response regulator VFG1389 Protein 3e-24 44
ACP_0232 YP_002753376.1 DNA-binding response regulator VFG0473 Protein 1e-17 42
ACP_0232 YP_002753376.1 DNA-binding response regulator VFG0596 Protein 5e-19 41