Gene Information

Name : lolD1 (ACP_1601)
Accession : YP_002754680.1
Strain : Acidobacterium capsulatum ATCC 51196
Genome accession: NC_012483
Putative virulence/resistance : Resistance
Product : lipoprotein-releasing system, ATP-binding protein LolD
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1919317 - 1920054 bp
Length : 738 bp
Strand : -
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGGCAACTTCAGCCCACAGCATCGTAGATAGTACGGATGTGGTTTTTCACGTTCATGAGGTGTCGAAAACCTACCAGAC
CGGCGATGTCACGGTCACCGCTCTGCGCTCGGTCAGCCTCGATCTCTCCGCCGGGGAATTCATCGTCATCCTGGGGCCTT
CGGGCAGCGGTAAATCCACTTTGCTGAATATTATGGGCGGGCTCGATACGCCCACCACTGGCGACGTGCGATTCCGCGAC
CACTGGCTCTCCAAGGCTGGAGACGCGGGCCTCACTCAGTTCCGCCGCGAGCATGTCGGCTTCGTCTTTCAGTTCTACAA
CCTCATTCCCAGTCTCACCGCGCTTGAGAACGTCGCTCTTGTCACTGAAATCGCCGAGCACGCCATGGCCCCCCGCAAAG
CGTTGCGACTGGTGGGCCTCACCGAGCGGCAGAACCATTTCCCCTCACAACTCTCCGGCGGGGAGCAGCAGCGCGTCGCC
ATCGCGCGCGCCATCGCCAAAACGCCCGATATTCTGCTCTGCGACGAGCCGACAGGCGCGCTCGATTACCCGACCGCAAA
ACTTATTCTGGAAGTGCTCGCTGACGTGAACCGGGAGTTGCACACGCTCGTCGCTGTGATCACGCACAATACGGCCATTG
CAGACATGGCAGACCGCGTCGTCCGTCTGCGCAGTGGAGAAATCACAGAGATCACGCGCAACGCCCGAAAGGCGCGCCCC
GACGAACTGGAGTGGTAA

Protein sequence : 
MATSAHSIVDSTDVVFHVHEVSKTYQTGDVTVTALRSVSLDLSAGEFIVILGPSGSGKSTLLNIMGGLDTPTTGDVRFRD
HWLSKAGDAGLTQFRREHVGFVFQFYNLIPSLTALENVALVTEIAEHAMAPRKALRLVGLTERQNHFPSQLSGGEQQRVA
IARAIAKTPDILLCDEPTGALDYPTAKLILEVLADVNRELHTLVAVITHNTAIADMADRVVRLRSGEITEITRNARKARP
DELEW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-35 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-36 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 5e-36 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-36 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD1 YP_002754680.1 lipoprotein-releasing system, ATP-binding protein LolD NC_012469.1.7685735. Protein 2e-52 49
lolD1 YP_002754680.1 lipoprotein-releasing system, ATP-binding protein LolD NC_012469.1.7686878. Protein 4e-38 43
lolD1 YP_002754680.1 lipoprotein-releasing system, ATP-binding protein LolD CP001581.1.gene798.p Protein 2e-38 41
lolD1 YP_002754680.1 lipoprotein-releasing system, ATP-binding protein LolD CP001581.1.gene598.p Protein 2e-39 41
lolD1 YP_002754680.1 lipoprotein-releasing system, ATP-binding protein LolD NC_008702.1.4606598. Protein 1e-31 41