Gene Information

Name : SPT_1779 (SPT_1779)
Accession : YP_002743165.1
Strain : Streptococcus pneumoniae Taiwan19F-14
Genome accession: NC_012469
Putative virulence/resistance : Resistance
Product : choline transport ATP-binding protein opuBA
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG1125
EC number : -
Position : 1692263 - 1692991 bp
Length : 729 bp
Strand : -
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGATTGAATACAAAAATGTAGCACTGCGCTACACAGAAAAAGATGTCTTGAGAGATGTCAATTTACAGATTGAGAATGG
GGAGTTCATGGTTTTAGTTGGGCCTTCTGGGTCAGGTAAGACGACCATGATTAAGATGATTAACCGTCTCTTGGAACCAA
CTGATGGAAATATTTATATGGATGGCAAGCGCATCAAAGACTATGATGAGCGTGAACTTCGTCTTACTACTGGATATGTT
TTACAGGCTATTGCTCTTTTTCCAAATCTAACAGTTGCGGAAAATATTGCTCTCATTCCTGAAATGAAGGGGTGGAGCAA
GGAAGAAATTACGAAGAAAACAGAAGAGCTTTTGGCTAAGGTTGGTTTACCAGTAGCCGAGTATGGGCATCGCTTACCTA
GTGAATTATCTGGTGGAGAACAGCAACGGGTCGGTATTGTCCGAGCTATGATTGGTCAGCCCAAGATTCTCCTCATGGAT
GAACCCTTTTCAGCCTTGGATGCTATTTCTCGCAAGCAGTTGCAGGTTCTGACAAAAGAATTACATAAAGAGTTTGGGAT
GACAACGATTTTTGTGACTCATGATACGGATGAAGCCTTAAAGTTGGCAGATCGTATTGCTGTTTTGCAGGATGGAGAGA
TTCGTCAGGTGTCGAATCCTGAGACTATTTTAAAAGCTCCTGCAACAGACTTTGTTGCAGACTTGTTTGGAGGTAGTGTT
CATGACTAA

Protein sequence : 
MIEYKNVALRYTEKDVLRDVNLQIENGEFMVLVGPSGSGKTTMIKMINRLLEPTDGNIYMDGKRIKDYDERELRLTTGYV
LQAIALFPNLTVAENIALIPEMKGWSKEEITKKTEELLAKVGLPVAEYGHRLPSELSGGEQQRVGIVRAMIGQPKILLMD
EPFSALDAISRKQLQVLTKELHKEFGMTTIFVTHDTDEALKLADRIAVLQDGEIRQVSNPETILKAPATDFVADLFGGSV
HD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 2e-40 45
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 6e-41 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SPT_1779 YP_002743165.1 choline transport ATP-binding protein opuBA NC_012469.1.7686878. Protein 3e-24 41