Gene Information

Name : SP70585_0417 (SP70585_0417)
Accession : YP_002739717.1
Strain : Streptococcus pneumoniae 70585
Genome accession: NC_012468
Putative virulence/resistance : Virulence
Product : capsular polysaccharide biosynthesis protein Cps4E
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG2148
EC number : -
Position : 367897 - 368490 bp
Length : 594 bp
Strand : +
Note : identified by match to protein family HMM PF02397

DNA sequence : 
ATGTATAGTATATTAAAACGGTTAGGAGATATATCTATATCTTTAATAGTTATAACGTTATTTTGTCCATTTTTTATCCT
AATTGCAATTGCGATTAAGTTTGATTCAAAAGGACCTGTAATATTTAAACAAAAACGTTTTGGAATTCACAAAAAAACTT
TTTATGTTTTTAAATTTCGGACTATGAAAGTGGAGACACCAAAAAATGTGGCAACTCGAGATTTACAAAATCCAGAGCAG
TGGATCACTAGAGTGGGAACTTTCTTAAGGAAAACATCTCTAGATGAATTGCCTCAATTATGTAATATTCTTGTTGGTGA
TATGAGTATTGTAGGACCAAGACCTGCCCTTTGGAATCAATTTGATTTGATTGAAGAAAGAGACAAATATGGAGCAAATG
ATATTTTACCTGGTTTAACAGGTTGGGCACAAATCAATGGTCGTGATAATCTATCAATAGATATGAAAGCTGAATTGGAT
GGATACTATGTGACACATAAATCGTTGCTAATGGACATTAGATGTATAGTAAGAACAATACCTTATGTGCTGAAACGCAA
AGGAATTGTAGAGGGAAGTCAAAAAGAGAGTTAA

Protein sequence : 
MYSILKRLGDISISLIVITLFCPFFILIAIAIKFDSKGPVIFKQKRFGIHKKTFYVFKFRTMKVETPKNVATRDLQNPEQ
WITRVGTFLRKTSLDELPQLCNILVGDMSIVGPRPALWNQFDLIEERDKYGANDILPGLTGWAQINGRDNLSIDMKAELD
GYYVTHKSLLMDIRCIVRTIPYVLKRKGIVEGSQKES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 7e-40 49
cap1N AAL26667.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 3e-37 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SP70585_0417 YP_002739717.1 capsular polysaccharide biosynthesis protein Cps4E VFG1369 Protein 5e-69 78
SP70585_0417 YP_002739717.1 capsular polysaccharide biosynthesis protein Cps4E VFG1309 Protein 8e-38 46