|
Name : ureC (BMEA_A0303) Accession : YP_002732052.1 Strain : Genome accession: NC_012441 Putative virulence/resistance : Virulence Product : urease subunit alpha Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0804 EC number : 3.4.22.35 Position : 296849 - 298561 bp Length : 1713 bp Strand : + Note : ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alp DNA sequence : ATGCCAGCAAGAATTAGCCGCGCCACCTATGCGCAAATGTTCGGCCCCACCGTTGGCGACAAGGTGCGCCTTGCCGATAC GGATCTCATCATCGAAGTCGAGCGCGACCTCACCACCTATGGCGAGGAAGTGAAGTTCGGCGGCGGCAAGGTTATCCGCG ACGGTATGGGCCAGAGCCAGCTTTCCCGCGCCGAAGGCGCGATGGACACCGTCATCACCAATGCGCTGATCCTCGACCAT AGCGGCATCTACAAGGCGGATATCGGGCTTCTCGACGGGCGCATCGCCCTCATCGGCAAGGCAGGCAATCCCGATACGCA GCCCGGCATCTCGATCATCATCGGCCCCGGCACGGAGATCATCGCTGGCGAAGGCAAGATCGTCACCGCGGGCGGCATCG ATACCCATGTCCATTTCATCTCGCCGCAACAGGTGGATGAGGCGCTGAATGCGGGCATCACCTGCATGGTTGGCGGCGGC ACCGGCCCCGCGCATGGCACGCTTGCCACCACCTGCACGCCTGGCCCCTGGCACATCGCCCGGCTGATCCAGTCCTTCGA TGGCCTGCCGATGAATATCGGTGTGTTCGGCAAGGGCAATGCCTCGCTGCCCGGCGCATTGGAAGAAATGGTTCGCGCCG GCGCCTGCGGCCTGAAACTGCATGAGGACTGGGGTTGCACACCGGCGGCTATCGACAATTGCCTTTCGGTTGCCGATCAT TTCGACGTTCAGGTGGCGATCCACACCGATACGCTCAATGAAGGTGGCTTCGTTGAAGATACGCTCAATGCCTTCAAGGG ACGCACGATCCACTCTTTCCATACGGAAGGTGCGGGCGGTGGGCACGCGCCCGATATCATCCGCGTTTGCCAATATCCGA ACGTGCTGCCTGCTTCGACCAACCCGACCCGGCCCTACACGGTCAACACGATTGCGGAACATCTCGACATGCTGATGGTC TGCCATCACCTGTCGCCTGCAATCCCTGAGGATATCGCCTTTGCCGAAAGCCGCATCCGCAAGGAAACGATTGCGGCGGA AGATATTCTGCACGACATGGGCGCCTTCTCGATCATTTCCTCCGACAGCCAGGCGATGGGCCGTGTGGGTGAAATGATCA TCCGCTGCTGGCAGACGGCAGACAAGATGAAGAAACAGCGCGGCAGCCTGCCTGACGATAGGCCGGGCAACGACAATTAC CGCGCCCGCCGTTATATTGCCAAATATACGATCAATCCTGCTATCGCGCATGGCATGGCGCATGAGATCGGCTCCGTGGA AGTGGGCAAGCGTGCGGATCTGGTGCTGTGGAACTCGGCCTTCTTCGGTGTCAAACCGGATATGGTGCTGCTTGGCGGCT GGATCGCCACCGCCCCCATGGGCGATGCAAACGGTTCCATCCCCACTCCGCAGCCTATGCATACCCGCCCCATGTTCGGC TCGTTCGGCAAGGCGCTCACCAACACGTCCATCACGTTTGTTTCGCAAGCAGCGATGGATGAGGGCCTGCGTGAGAAGAT CGGCGTGGACAAGCAGCTGGTGGCGGTCGTCAATACGCGCGGCGGCATCGGCAAGCATTCCATGATCCTCAACAATGCCA TGCCGCAGATGGAAGTGGACCCGGAAACCTATGAAGTGCGTGCGGACGGCGAACTTCTCACCTGTGAGCCGGTAGACGTG GTACCAATGGCGCAACGCTACTTCCTGTTTTGA Protein sequence : MPARISRATYAQMFGPTVGDKVRLADTDLIIEVERDLTTYGEEVKFGGGKVIRDGMGQSQLSRAEGAMDTVITNALILDH SGIYKADIGLLDGRIALIGKAGNPDTQPGISIIIGPGTEIIAGEGKIVTAGGIDTHVHFISPQQVDEALNAGITCMVGGG TGPAHGTLATTCTPGPWHIARLIQSFDGLPMNIGVFGKGNASLPGALEEMVRAGACGLKLHEDWGCTPAAIDNCLSVADH FDVQVAIHTDTLNEGGFVEDTLNAFKGRTIHSFHTEGAGGGHAPDIIRVCQYPNVLPASTNPTRPYTVNTIAEHLDMLMV CHHLSPAIPEDIAFAESRIRKETIAAEDILHDMGAFSIISSDSQAMGRVGEMIIRCWQTADKMKKQRGSLPDDRPGNDNY RARRYIAKYTINPAIAHGMAHEIGSVEVGKRADLVLWNSAFFGVKPDMVLLGGWIATAPMGDANGSIPTPQPMHTRPMFG SFGKALTNTSITFVSQAAMDEGLREKIGVDKQLVAVVNTRGGIGKHSMILNNAMPQMEVDPETYEVRADGELLTCEPVDV VPMAQRYFLF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ureC | NP_286680.1 | urease subunit alpha | Virulence | TAI | Protein | 2e-172 | 67 |
| ureC | NP_287088.1 | urease subunit alpha | Not tested | TAI | Protein | 2e-172 | 67 |
| ureC | YP_003784325.1 | urease subunit alpha | Not tested | PiCp 7 | Protein | 3e-156 | 62 |
| ureC | YP_005686358.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 3e-156 | 62 |
| ureC | YP_005684266.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 2e-156 | 62 |
| ureC | YP_005682174.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 3e-156 | 62 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ureC | YP_002732052.1 | urease subunit alpha | VFG0270 | Protein | 4e-153 | 60 |
