Gene Information

Name : PERMA_0952 (PERMA_0952)
Accession : YP_002730739.1
Strain : Persephonella marina EX-H1
Genome accession: NC_012440
Putative virulence/resistance : Resistance
Product : transcriptional activator protein IrlR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 908115 - 908771 bp
Length : 657 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGAAGATACTGATAGTTGAGGATAATGTACAGCTGAACGATACGCTTAAAGAGGTTCTTGAGATAAACGGATATCTTGT
AGATACAGCTTTTGATGGTGAAGAGGCACTGGACTACCTTAACGCAACAGAGTACGATCTTATAATACTTGATATCATGC
TGCCGAAGATAGATGGCTATCAGGTATGTCAGCTTGCAAGGGACAAAGGAATAAACACACCTATTCTTATGCTTACAGCA
AAGGACAGACTTGAGGACAAGGTTAAAGGTCTTGATATAGGAGCTGACGACTATCTTGTAAAACCTTTTGAGATAGATGA
GCTTATAGCAAGGGTAAGGGCGTTAATAAGAAGAGCTTCTGCTGAGAAAAGTAATATCATAAAAATAGGAGAGTTCGTTA
TAGACCTGAACAGAAGGGAGGTCAAAAAAAACGGTACAAAACTTATGATAACTCCAAAACTTTTCTGTATACTTGAACAG
TTACTGAGAAACAGAGGAAAGGTTGTTACATACGAGACCCTAATGAACAAATGCTGGGATATTAATGATTACCCAACAAG
GGAGACAGTAAGGGCAAACATAAAGCTACTGAGAAAGATACTCCAGGACAGGGATATCATCCATAACGTGTCAGGAGTGG
GATACAAAATAGAATGA

Protein sequence : 
MKILIVEDNVQLNDTLKEVLEINGYLVDTAFDGEEALDYLNATEYDLIILDIMLPKIDGYQVCQLARDKGINTPILMLTA
KDRLEDKVKGLDIGADDYLVKPFEIDELIARVRALIRRASAEKSNIIKIGEFVIDLNRREVKKNGTKLMITPKLFCILEQ
LLRNRGKVVTYETLMNKCWDINDYPTRETVRANIKLLRKILQDRDIIHNVSGVGYKIE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
nisR2 YP_006309922.1 NisR Not tested FWisland_1 Protein 2e-13 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PERMA_0952 YP_002730739.1 transcriptional activator protein IrlR NC_002952.2859905.p0 Protein 3e-24 42
PERMA_0952 YP_002730739.1 transcriptional activator protein IrlR NC_002758.1121668.p0 Protein 2e-24 42
PERMA_0952 YP_002730739.1 transcriptional activator protein IrlR NC_009641.5332272.p0 Protein 2e-24 42
PERMA_0952 YP_002730739.1 transcriptional activator protein IrlR NC_013450.8614421.p0 Protein 2e-24 42
PERMA_0952 YP_002730739.1 transcriptional activator protein IrlR NC_007793.3914279.p0 Protein 2e-24 42
PERMA_0952 YP_002730739.1 transcriptional activator protein IrlR NC_003923.1003749.p0 Protein 2e-24 42
PERMA_0952 YP_002730739.1 transcriptional activator protein IrlR NC_002745.1124361.p0 Protein 2e-24 42
PERMA_0952 YP_002730739.1 transcriptional activator protein IrlR NC_009782.5559369.p0 Protein 2e-24 42
PERMA_0952 YP_002730739.1 transcriptional activator protein IrlR NC_002951.3237708.p0 Protein 2e-24 42
PERMA_0952 YP_002730739.1 transcriptional activator protein IrlR NC_007622.3794472.p0 Protein 3e-24 42
PERMA_0952 YP_002730739.1 transcriptional activator protein IrlR CP001138.1.gene1939. Protein 1e-22 41
PERMA_0952 YP_002730739.1 transcriptional activator protein IrlR BAC0197 Protein 9e-30 41
PERMA_0952 YP_002730739.1 transcriptional activator protein IrlR U82965.2.orf14.gene. Protein 2e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PERMA_0952 YP_002730739.1 transcriptional activator protein IrlR VFG0475 Protein 1e-22 41