Gene Information

Name : PERMA_0898 (PERMA_0898)
Accession : YP_002730684.1
Strain : Persephonella marina EX-H1
Genome accession: NC_012440
Putative virulence/resistance : Virulence
Product : thiol peroxidase (Scavengase P20)
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG2077
EC number : 1.11.1.-
Position : 853815 - 854318 bp
Length : 504 bp
Strand : +
Note : identified by match to protein family HMM PF00578; match to protein family HMM PF08534

DNA sequence : 
ATGGCTACAACAGTAACATTAAAAGGAAACGCAGTTGCACTGGCAGGTCCAGAAATTAATGTTGGAGACAGAGCTCCTGA
AGCTGTGGTGGTAGCTTCAGACCTTTCAGAAAAAACAATAGGTGGAGCTACAGGAAAGACTCAGGTTATCATTACAGTCC
CTTCACTTGACACACCTGTCTGTGAGGCTGAAACTAAAAAGTTCAACGACATTCTGGCAGGACTTGATGTTGATGTAACA
GTTGTCTCAATGGATCTTCCATTTGCTGAGAAAAGATTCTGTGAGTCTTTTAACATAGGAAATATCACTGTAGCATCTGA
TTTCAGATACAGAGATATGGAAAAGTACGGTGTTCTTATAGCTGAAGGTGCTTTAAAGGGAATTTTAGCAAGAGCTGTAT
TTGTTGTTAACGGTGAAGGAAAGGTTGTTTACAAACAGATCGTTCCTGAGATAACAGAAGAACCAAACTACGATGATGTT
TTAGCCTGCTTAAAATCTTTATAA

Protein sequence : 
MATTVTLKGNAVALAGPEINVGDRAPEAVVVASDLSEKTIGGATGKTQVIITVPSLDTPVCEAETKKFNDILAGLDVDVT
VVSMDLPFAEKRFCESFNIGNITVASDFRYRDMEKYGVLIAEGALKGILARAVFVVNGEGKVVYKQIVPEITEEPNYDDV
LACLKSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tpx YP_001216305.1 thiol peroxidase Not tested VPI-1 Protein 4e-20 41
tpx NP_230472.1 thiol peroxidase Virulence VPI-1 Protein 2e-20 41
tagD AAK20751.1 toxR-activated gene D protein Virulence VPI Protein 2e-20 41
tagD AAK20781.1 toxR-activated gene D protein Virulence VPI Protein 1e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PERMA_0898 YP_002730684.1 thiol peroxidase (Scavengase P20) VFG0087 Protein 5e-21 41