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Name : PERMA_0824 (PERMA_0824) Accession : YP_002730611.1 Strain : Persephonella marina EX-H1 Genome accession: NC_012440 Putative virulence/resistance : Virulence Product : general secretion pathway protein E (Type II traffic warden ATPase)(Cholera toxin secretion protein EpsE) Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 778572 - 780002 bp Length : 1431 bp Strand : + Note : identified by match to protein family HMM PF00437 DNA sequence : TTGGGTGTTGATAATCTCCCTGTTGAGTTTTTAAAGGAGAATCAGATCGTTCCTTCTGAAGACGGAAAGGTTTTTATAAC TAAAAAAACACCTTTTTACGCAGTTGAGGATATAAGATTTCTTACAGGAAAAACACCTGAGACCGTTCTTATATCTGAAG AGGAGTTCAACGAAAAACTTGAGGAGTATATCTCAAATATACAGAACAGCCTTGAGGAAGAGACAGAGATAAAGGAGACA TTCTTTGAGGATCTTCTTGTCGGTTCAGACGCACCTGTAATCCAGATGTTAAACTCCCTCTTCCTTAAAGCTGTAAGATC AGACGCAAGTGATATACATTTTGAGCCTTTCTCAGACAGGGTTGTTGTAAGGTTCAGACTTGATGGTGTTCTACATGAGG TTTCTACAATACCGTTAAATGCATATCCTCAGGTTGTATCAAGGATAAAGATAATATCAAAACTTAATGTGGCTGAAAAA AGGCTTCCTCAGGATGGAAGAATAAAGGTCAAGATCGGTGAAAAAAAGCTTGATATGAGGGTGTCCACACTTCCTACAGT TTTTGGTGAGAGGGTTGTTATAAGACTTTTAGACAGATCGGACACTCTTTTAACACTTGAGGAGCTTGGTTTTGAGCCTG ACGATCTTGAGAAGTACGAAAGGATTATAAGAAAACCACACGGTCTTGTTCTTGTTACAGGACCAACAGGCTCTGGTAAA TCAACAACACTTTACGCATCACTACTAAAACTTAAAACACCGAGAAAGAACATAATAACTATAGAAGATCCTGTTGAGTA CCAGATAGATGGAATAAGCCAGATACAGGTCAATCCAAAGATAGATCTTACTTTTGCAAACGGACTTAGGAGCATACTTA GACAGGATCCTGACATTGTGATGGTAGGTGAGATAAGGGATCTTGAGACAGCAGAGATAGCGATACACGCATCAATGACA GGTCACCTTGTTCTTTCAACACTTCACACAAATGATGCTCCTTCAGCTGTTGCAAGACTTGTTGATATGGGTGTTGAGCC TTTCCTTGTAGCATCATCACTTGAGGGTGTTATAGCACAGAGACTTGTCAGAAAGATATGTGAAAGCTGTAAGAAAGAGT ATATACCGAGGGATGACGAGGTTGAGGAGATAAACAGGTATATGGGAAGGGAGCTAAAGATCGGTAAGCTTTATAAGGGG GAAGGCTGTGATAACTGTCTCGGAACAGGATTTAAAGGAAGAATAGCTATATACGAAATTATGGAGATAGACGAGGAGAT GAGAGCTGTTATATCTAAACAGCCTGAAAGTATGGCTGTTAAAGAAAAAGCGCTGGAAAAGGGTATGAGAACTCTGATAC AGGACGGACTTTTAAAAGTGGTAAAAGGTGTAACAACAGTTGAGGAAGTTCTCCAGGTGGCACAGGTGTAA Protein sequence : MGVDNLPVEFLKENQIVPSEDGKVFITKKTPFYAVEDIRFLTGKTPETVLISEEEFNEKLEEYISNIQNSLEEETEIKET FFEDLLVGSDAPVIQMLNSLFLKAVRSDASDIHFEPFSDRVVVRFRLDGVLHEVSTIPLNAYPQVVSRIKIISKLNVAEK RLPQDGRIKVKIGEKKLDMRVSTLPTVFGERVVIRLLDRSDTLLTLEELGFEPDDLEKYERIIRKPHGLVLVTGPTGSGK STTLYASLLKLKTPRKNIITIEDPVEYQIDGISQIQVNPKIDLTFANGLRSILRQDPDIVMVGEIRDLETAEIAIHASMT GHLVLSTLHTNDAPSAVARLVDMGVEPFLVASSLEGVIAQRLVRKICESCKKEYIPRDDEVEEINRYMGRELKIGKLYKG EGCDNCLGTGFKGRIAIYEIMEIDEEMRAVISKQPESMAVKEKALEKGMRTLIQDGLLKVVKGVTTVEEVLQVAQV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-85 | 53 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 8e-86 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PERMA_0824 | YP_002730611.1 | general secretion pathway protein E (Type II traffic warden ATPase)(Cholera toxin secretion protein EpsE) | VFG1876 | Protein | 1e-88 | 54 |
| PERMA_0824 | YP_002730611.1 | general secretion pathway protein E (Type II traffic warden ATPase)(Cholera toxin secretion protein EpsE) | VFG0182 | Protein | 8e-87 | 52 |
| PERMA_0824 | YP_002730611.1 | general secretion pathway protein E (Type II traffic warden ATPase)(Cholera toxin secretion protein EpsE) | VFG2048 | Protein | 9e-87 | 52 |
| PERMA_0824 | YP_002730611.1 | general secretion pathway protein E (Type II traffic warden ATPase)(Cholera toxin secretion protein EpsE) | VFG2426 | Protein | 3e-70 | 44 |
