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Name : smpB (PERMA_0604) Accession : YP_002730393.1 Strain : Persephonella marina EX-H1 Genome accession: NC_012440 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 557635 - 558093 bp Length : 459 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGGAATTAAGGTCGTGGCAACAAACAAAGTTGCTTACCACAACTACAACATAATAGAGACGTACGAGGCAGGGATAGT ATTGAAAGGATCAGAGGTAAAATCTATCAGGGAAGGAAGTGTAAATCTCAGGGACAGTTTTGTAAGAATAGACAATGGTG AAGCCTTTATATACAACATGTATATAGCTCCGTACAAACCTGCATCAAAACTTCAGCATGACCCCTACAGAAAAAGGAAA CTTCTACTCCATAAAAGAGAGATACTCAAGCTTATGGGAAAAGTTCAGGAAAAAGGTCTGACAATAATACCAACAAAGGT TTATCTTAAAAATGGAAAAGTCAAAATAGAGATAGCTCTTGCAAAAGGTAAAGCTAAATACGAAAAGAGAGAAGCTATAA AGGAAAGGGATATGAAAAGGGAGCTATCAAAGAAATACAAAGGAAAGATAAAACTATAA Protein sequence : MGIKVVATNKVAYHNYNIIETYEAGIVLKGSEVKSIREGSVNLRDSFVRIDNGEAFIYNMYIAPYKPASKLQHDPYRKRK LLLHKREILKLMGKVQEKGLTIIPTKVYLKNGKVKIEIALAKGKAKYEKREAIKERDMKRELSKKYKGKIKL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 3e-33 | 52 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 6e-30 | 47 |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 5e-22 | 44 |
