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Name : PERMA_1739 (PERMA_1739) Accession : YP_002731503.1 Strain : Persephonella marina EX-H1 Genome accession: NC_012440 Putative virulence/resistance : Virulence Product : negative regulator of genetic competence ClpC/mecB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1682780 - 1685230 bp Length : 2451 bp Strand : + Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 DNA sequence : ATGTTTGAAAAATTTACGGAAAGAGCAAGAAAAGTAATACTGAATGCGAGAGAGAAGGCATTAGAATATAGAAGCAATTA CCTGGGCAGTGAACATCTGCTCCTTTCTCTACTTGAGGAAGAGGACATTCCTGTTCTTGTTCTTTCAAGATTTGGTCTTA CTGTTGACAAGGTAAAAAGAACCCTTACATCACAGATGGTTCACGGATCACACTCAGGTGAGGTTCTTTTTGCTCCTGAT GCGAAGAGAGTTCTTGAGTTTGCCGTTGAAGAGGCCAGAATACTTCACCACCAGTTTGTAGGGCCTGAACATCTCCTTAT CGGGATAGTCCGTGAGAAGACAGGTCTTGGCGGTAGAGTTTTAAGAGGTTTTGGTATAGATGAGTACTCAATAAGAAGGG AGATACTCCAGATACTTGGAGAGATACCACCTCAGGAGCAGGTGAAACAGGTTCCTACACCTAATATAGACAGATTCAGC AGAGATCTTACAGCTCTTGCAAGGGAAGGAAAGCTTGATCCTGTTATAGGAAGGGATAAGGAGATAGACAGGGTTATACA GATACTCTCAAGAAGAAGAAAGAACAACCCTGTTCTTATAGGTGAGCCAGGTGTAGGTAAAACATCAATTGTTGAAGGTC TCGCCCAGAGAATAGCAAATAAGGAAGTACCTGAGACATTACAGTCTAAAAGAATTGTTGCTCTTGATCTTGCTGCCCTT GTTGCAGGAACAAAGTACAGAGGACAGTTTGAAGAAAGGCTTAAGAATATACTTAAAGAGCTTGAAAAAGCACCTTACAT AATACTTTTCATAGATGAGCTTCATACACTTGTAGGAGCAGGAGCAGCTGAAGGTTCAATAGATGCATCAAATATGTTAA AACCGGCTCTTGCAAGGGGAGAGATACAGGTTATAGGAGCAACAACAATAGATGAGTACAGAAAGTACATAGAGAAGGAT GGAGCACTTGAGAGAAGATTCCAGCCAGTTCTTGTAGAGCCTCCTACACCTGAAGATACTGTAAAGATACTTATGGGTCT GAAGAAGAAGTTTGAGGAGTTCCACGAGGTTGAGTACACAAAGGATGCTGTTGAAAAGGCTGTTGAGTACTCAGTTAAGT ATATAACAGAAAGACAGCTGCCAGATAAGGCTATAGATCTGATAGATGAGGCTGGAGCATGGGTGAGAATAAGGGAGATG GAACTTCCTCCTAAGCTCAAAAAGATAGAGGACAAGATAAGAAAGATAGAGGAAGAAAAGGCTAAAGCTGCAAAAGAGCA GGATTATGAAAAAGCTGCAAAACTGAGAGATGAAGAGCTGAAACTGAGGGCTAAGTTTGAGACATTAAAGGCTGAATGGA AGGAGAAAAGGAAGGTTAAAAAACCTAAGGTTAAAGATCAGGATATAGCACTGGTTGTTGCAAAATGGACTGGAATACCT GTTGCAAGACTAACAGAGACACAGGCAGAGAAACTGTTACATATAGAGGAAGAGCTACACAAAAGGGTTGTTGATCAGTC TGAGGCTATAGAAGCAATAGCAAAGGCTATAAGAAGAAACAGTGTTGGTCTGAAAGGAACACACAGACCTATAGGTGTGT TTATGTTCCTCGGTCCAACAGGTGTTGGTAAGACTGAAACAGCTAAGGCCCTTGCTGAGTATCTGTTTGGAACTGAAGAG GCACTTATAAGGTTTGATATGTCTGAGTATATGGAAAAACATACAGTATCAAGGCTTGTTGGAGCACCTCCAGGATATGT TGGGTATGAGGAAGGAGGTCAGCTTACAGAAGCTGTGAGAAGAAGACCTTACTCAGTGATACTTTTTGATGAGATAGAGA AAGCACATCCCGATGTGTTTAACATATTCCTCCAGATATTTGATGATGGAAGACTTACAGACTCTTTTGGAAGGGTTGTT GATTTCAGCAATACTATAATAATCATGACTTCTAACCTTGGAGCAAGACTTATACTTGAATCAAACAGACTTGGATTTGA AAGATCAACAGGAATGCTTGAATACAACGAGATGAAGAAGAATGTTCTCCAGCAGGTTAAGAAACATTTCAGCCCCGAGT TCCTTAACAGACTTGACGAGATAATAGTATTCAAGCCTCTGGACAAAGAAGTTATAAAAGGTATAATTGATATTCAGCTT AAGGAAATAAACAAAAGGTTAAAGGAATGGGGCATAACTGTAAAACTTACGAAGAAGTTCGTAGAGTATCTGATAGAGAA AGAGTTCAGACCGGAATTTGGAGCAAGAAGTATAAAGAGAGCCCTCCAGTCACTTGTAGAGGATCTTTTAGCGGAAGAGA TACTGAAAGGGAAGATAACAGAAGGCTCTGTGGCAGAAGTTACTGTGAAGAAGGATGGTCAGGTTGGAATAAAGGTAAAA AGACCAAAAACACAGAAAAAAGCGAAGAAAAAAGAAGTAGCAGCAACATAA Protein sequence : MFEKFTERARKVILNAREKALEYRSNYLGSEHLLLSLLEEEDIPVLVLSRFGLTVDKVKRTLTSQMVHGSHSGEVLFAPD AKRVLEFAVEEARILHHQFVGPEHLLIGIVREKTGLGGRVLRGFGIDEYSIRREILQILGEIPPQEQVKQVPTPNIDRFS RDLTALAREGKLDPVIGRDKEIDRVIQILSRRRKNNPVLIGEPGVGKTSIVEGLAQRIANKEVPETLQSKRIVALDLAAL VAGTKYRGQFEERLKNILKELEKAPYIILFIDELHTLVGAGAAEGSIDASNMLKPALARGEIQVIGATTIDEYRKYIEKD GALERRFQPVLVEPPTPEDTVKILMGLKKKFEEFHEVEYTKDAVEKAVEYSVKYITERQLPDKAIDLIDEAGAWVRIREM ELPPKLKKIEDKIRKIEEEKAKAAKEQDYEKAAKLRDEELKLRAKFETLKAEWKEKRKVKKPKVKDQDIALVVAKWTGIP VARLTETQAEKLLHIEEELHKRVVDQSEAIEAIAKAIRRNSVGLKGTHRPIGVFMFLGPTGVGKTETAKALAEYLFGTEE ALIRFDMSEYMEKHTVSRLVGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNIFLQIFDDGRLTDSFGRVV DFSNTIIIMTSNLGARLILESNRLGFERSTGMLEYNEMKKNVLQQVKKHFSPEFLNRLDEIIVFKPLDKEVIKGIIDIQL KEINKRLKEWGITVKLTKKFVEYLIEKEFRPEFGARSIKRALQSLVEDLLAEEILKGKITEGSVAEVTVKKDGQVGIKVK RPKTQKKAKKKEVAAT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 2e-163 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PERMA_1739 | YP_002731503.1 | negative regulator of genetic competence ClpC/mecB | VFG0079 | Protein | 0.0 | 53 |
