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Name : lysS (PERMA_1426) Accession : YP_002731194.1 Strain : Persephonella marina EX-H1 Genome accession: NC_012440 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1342753 - 1344492 bp Length : 1740 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCTGAAGAGATAATTGAGAGCAGAAGGGATCTTGTAAAAAGATTAAAAGAGAAAGGGATAAACCCATATCCACATAA ATTCAGTGTGACAGCAAAACTTGATCAGATAAGAAAAAAGTATGAACTTCCTGTTGAGAGGGATAAAGAGTATATCCTTA AAGGAAGGATAAAAAGGGTATCTAAAAGGGAAGACAGATATATCATAAGATTTGCTGATCTGACTGAGCCTGTGGAGATA CAGGTTATCTTTCCGATAGATAAGGGAAAAGTATCTCCAAACACTGTATGCTCCTTTAAGGGATATCTAGATCGTATAGA TGGGAAGTTAACACTTGTGGCTGAAGAGGTTCTTGAAGGAGAAGAGGGAACAGCTGTAAGTGAGGTTAAAAGGGTTTACG ATCTTGATCCTGGAAGGGAGAAGGTCAGCGTAGCTGGAAGGATCGTATCTTTCAGGGATCAGGGGAAGGCAGCGTTCGGT CATATTCAGGATGCTGACGGTAAGATCCAGATATACTTCAGAAGGGACACACTTGGTGATGAAAAGTACAACGAGGCTAT GGAGATACTTGATATAGGAGATATTGTTGGTGTTGAAGGAGAGCTTTTCAGAACTATGACAGGTGAGTTAACTGTTGAGG TTAAGGATTTTAAGCTCTTAACAAAATCATTAAGGGCTTTACCTGAGAAATGGCATGGACTGAAGGATGTGGAACTGAGA TACAGAAGAAGGTATGTTGATCTTATAGCAAATCCAAAGGCTAGGGAGATATTCAAGATAAGGTATAAAGCTATAAAAAG TTTGAGAGAGTTCCTTGAGAGTGAAGGTTTTATGGAGGTTGAGACTCCAATACTCCAGTCTGTTGCATCAGGTGCTATGG CAAGACCTTTTATAACACACCACAACGCACTTGATATTGATATGTACCTGAGAATAGCCCCTGAACTTTATCTCAAGATG CTTATAGTTGGAGGATTTAACAGGGTTTACGAGCTCGGGAGAAACTTCAGAAATGAGGGTATAGACACAACACACAATCC TGAGTTTACAATGGTTGAGTTTTACGCTGCCTACATGGACTACAACGATCTTATGGATCTTACTGAGAGACTTATGAGAA AGATACTTATGGACACAGTAGGAAAGCTGAAGATAACCTGGGAAGGTCAGGAGCTTGATTTTTCAAAGCCGTTCAGAAGA CTTAGATTTTTTGATGCACTGAAGGAGAAGACAGGTAAAGATAAGGAGTTTTTCCTTGATGAAGGAAAGGCGAGAGAGTT TGCAAAAGAGGTGGGGATACCTAAAGCTGAAACATTAACACATCTGAAGATACTGGACAAACTATTTGAACATTTTATAG AAGAAGACCTTGTTCAGCCTACATTTGTTATAGATTTTCCAAAGATACTCTCACCTCTTGCAAAAACACACAGGGATGAT CCTGATCTTGTTGAGAGGTTTGAGCTTATTGTTAACAAGCAGGAGATAGCAAACGCCTATACCGAGCTTAACGATCCTGA GGATCAGAGGGAAAGGTTCTTACAGCAGCTCAAAGAAAAGGCCGCAGGTGATGAAGAAGCTATGGATATTGATGAGAACT TCCTTACAGCCCTTGAGTACGGTCTTCCTCCAACAGGAGGTGAGGGTATAGGGATAGATAGACTTGTTATGATGCTAACA GACAGCCCATCAATAAGGGAAGTTATACTATTCCCAACATTAAGACCTGAGAAAGATTGA Protein sequence : MSEEIIESRRDLVKRLKEKGINPYPHKFSVTAKLDQIRKKYELPVERDKEYILKGRIKRVSKREDRYIIRFADLTEPVEI QVIFPIDKGKVSPNTVCSFKGYLDRIDGKLTLVAEEVLEGEEGTAVSEVKRVYDLDPGREKVSVAGRIVSFRDQGKAAFG HIQDADGKIQIYFRRDTLGDEKYNEAMEILDIGDIVGVEGELFRTMTGELTVEVKDFKLLTKSLRALPEKWHGLKDVELR YRRRYVDLIANPKAREIFKIRYKAIKSLREFLESEGFMEVETPILQSVASGAMARPFITHHNALDIDMYLRIAPELYLKM LIVGGFNRVYELGRNFRNEGIDTTHNPEFTMVEFYAAYMDYNDLMDLTERLMRKILMDTVGKLKITWEGQELDFSKPFRR LRFFDALKEKTGKDKEFFLDEGKAREFAKEVGIPKAETLTHLKILDKLFEHFIEEDLVQPTFVIDFPKILSPLAKTHRDD PDLVERFELIVNKQEIANAYTELNDPEDQRERFLQQLKEKAAGDEEAMDIDENFLTALEYGLPPTGGEGIGIDRLVMMLT DSPSIREVILFPTLRPEKD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-103 | 49 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 1e-83 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002731194.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-103 | 49 |
