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Name : lysS (BHWA1_01122) Accession : YP_002721306.1 Strain : Brachyspira hyodysenteriae WA1 Genome accession: NC_012225 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase LysU (class II) Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1296831 - 1298363 bp Length : 1533 bp Strand : - Note : - DNA sequence : ATGTCAGAAAATCAAAATAATTCTGAAAATACACAAAATGAAAAAAATACTAGTGTAGAAAAAAATGCAGAAAAAGAAAA CAGAAGAGAGAAGTTAAATACATTGAGAGGTATGGGAATAAACCCATTTCCAAACAGTTATGATGTAACTTATAAGTCTC ATGAGATAGCAGAGAAATTTGAAGAGTTGGAGAAGAATGAAACTGAAGTTGCAATTGCCGGAAGAATTATGCTTTATAGA GTAATGGGTAAATCTTCATTTTTAACTATAAAGGATGCTGAAGGAACTATTCAGGCTTATATACAAAGAGATAAGGTGGG CGATGAGTTCTATAATACAGTATTCAAAAAATTAATAGATATAGGTGATATTGTAGGCGTAAAAGGTACTGTTTTTAAAA CTAAAACAGGTGAAATTACAATATATGCAAATGAATTAAAATTATTAACTAAATCACTTAATCCATTGCCTGAAAAATTT CATGGATTAACAGATACAGAACTTCGCTACAGACAAAGATATGTTGATTTGATAATGAATGATGATGTTAAAGAAGCATT TATTAAAAGATCAAAAATGATTTCTGCTATAAGAGAAGTAATGATAGAAAATAACTTTTTAGAAGTAGAAACTCCTATGA TGCATCCTCTGATTGGAGGAGCTAAGGCTAAACCTTTCATCACACATCATAATACTTTGGATATGACATTATATTTGAGA ATAGCTCCTGAACTTTATTTGAAAAGACTTGTAGTAGGCGGTTTTGACAGAGTATTTGAGCTTAATAGAAATTTCCGTAA TGAAGGTATATCTACAAGACATAATCCAGAGTTCACTATGATGGAAGCATATATGGCTTATGCTAATTTCCACAAAGTTA TGGAATTGGTAGAAGAAGTATTCTCAAAAGTATGTTTCAAATTAAATGGAAAATATACTTCTCAGTATAAAGATTATGAG ATTAATTTTAAACCTCCATTTGCAAGAGTACCTATGGTTGATTTGGTTAAAGAGCATTCAGGACTTGATTTTAATGCTAT ACAGTCAGATGATGAGGCATTAGAGAAAGCTAAATCAGTTGGTGTTGAAATAGATACTTCAAAAACTAAACCTTCTAAAT GGGAAGTAATGGTTGCTGTATTTGAAGAAAAAGTTGAAGAGAAATTGATACAGCCTACATTTGTTATTAATTATCCTAAA GCTGTTTCTCCTCTTTCAAAATCTTATCCTGATAATCCGGATATTACAGAAAGATACGAGTTATTTATAGGCGGAATGGA GATGTCTAATGGATTCAGTGAGCTTAATGACCCAATAGACCAAAAAGAAAGATTTGAAGAGCAATTAAAGGCAAAAGCAC GCGGTGAAGATGAGACTATGGATATGGATTTAGATTATATTAATGCTTTGGAATATGGACTTCCTCCTACAGGCGGACTT GGAATAGGTATTGACAGAATGGCTATATTATTCTTGAATGTGGCAAGCATTAGAGATACTATTCTTTTCCCTCAGATGAG AAAATTAGATTAA Protein sequence : MSENQNNSENTQNEKNTSVEKNAEKENRREKLNTLRGMGINPFPNSYDVTYKSHEIAEKFEELEKNETEVAIAGRIMLYR VMGKSSFLTIKDAEGTIQAYIQRDKVGDEFYNTVFKKLIDIGDIVGVKGTVFKTKTGEITIYANELKLLTKSLNPLPEKF HGLTDTELRYRQRYVDLIMNDDVKEAFIKRSKMISAIREVMIENNFLEVETPMMHPLIGGAKAKPFITHHNTLDMTLYLR IAPELYLKRLVVGGFDRVFELNRNFRNEGISTRHNPEFTMMEAYMAYANFHKVMELVEEVFSKVCFKLNGKYTSQYKDYE INFKPPFARVPMVDLVKEHSGLDFNAIQSDDEALEKAKSVGVEIDTSKTKPSKWEVMVAVFEEKVEEKLIQPTFVINYPK AVSPLSKSYPDNPDITERYELFIGGMEMSNGFSELNDPIDQKERFEEQLKAKARGEDETMDMDLDYINALEYGLPPTGGL GIGIDRMAILFLNVASIRDTILFPQMRKLD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-104 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002721306.1 | lysyl-tRNA synthetase LysU (class II) | VFG1668 | Protein | 2e-104 | 54 |
