Gene Information

Name : hofB (EpC_07780)
Accession : YP_002647808.1
Strain : Erwinia pyrifoliae Ep1/96
Genome accession: NC_012214
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : N : Cell motility
COG ID : COG2804
EC number : -
Position : 898398 - 899798 bp
Length : 1401 bp
Strand : -
Note : silverDB:cEP00779

DNA sequence : 
ATGACACCGGCGACACAACGAGCGGTCGAAGCGATTTGTCTGGCTCATCAGGCGATTATCGTTGAGTTCAACGCACAGCG
GCTACATATTGCGGTCGCTGAGACCCCCAGCCATACGCTGATGGCCGAACTGCGTTTTGCCGCCCACTGCCCTATTGAAG
TTGAATGCTGGCCGCAAGCAAGGCTGGAGCAGTTTCACCAACGGAAGGAACTTCCGGCTCTGGCAGCAGCAGAGGGTGCG
CCGGAGTACAACGGCACAGCAGTAGAAATCATCAACGCTTTACTGGTGCAAGCGTTACAAAAACGTGCATCTGATATTCA
TATTGAGCCGCAGGAAAGTAGCCTGCGGCTGCGTTTACGTGTCGACGGCGTATTACAGCAATTGCCCCTGGCCGGAGTGG
AAAGCAGCACACCGCTGATCGCTCGTCTGAAAATTCTTGCCAGCCTGGATATCTCGGAACGTCGGGTGCCACAGGACGGG
CAGTTTTCACTGCTGCTGAATGGTAATACCGAATCATTCCGTCTCTCGACCCTGCCAACACGATTTGGTGAAAAGGCCGT
AGTGCGCCTGATGCAAAGCGATAGCCATGCCATTGCGCTGGAAAACCTCGGCATGCCCGGCTCGCTGTTGAAGCGCTACC
GCGAAGCACTGGCTCGTCCGCAGGGGATGATCCTGGTCACCGGCCCCACCGGCAGTGGCAAAACCTTTACGCTTTATAGC
GGCCTGAGCTGGTTGAATATCGCCACGCGTAACCTGTGTAGCGTGGAGGATCCGGTGGAAATCCCCATGTTGGGGGTCAA
TCAAACCCAGATCCACGCTAAGTCAGGGCTGGATTTTCACCGCGTGTTACGTGCTCTACTGCGCCAGGATCCCGACGTGA
TTATGATCGGCGAGATCCGTGATGCTGAAACCGCTGAGATCGCCATAAAAGCAGCGCAGACAGGGCACCTGGTACTTTCA
ACGTTGCATACCAACTCAACTACCGAAACGCTGGTGCGGCTTGGTCAGATGGGCGTGCCGGGATATTTGCTGGCATCAGC
TCTTAAACTGGTCATTGCGCAGCGGCTGGTACGAAAGCTCTGTCCTCACTGCCGGCAACCTGCTACGGCAGTTTCCCATT
TTCCTCCCCATATCTGGCCGGGAACCGTGCAAAACTGGCTGGCGGTGGGCTGTGAACGTTGCTTCTCGGGTTTTTATGGC
CGTCTTCCTCTGTTTGAACTGCTGCCCATCTCCGCACGACTGCAAAACGCACTGGCAAAATCGGCCCAGCCGGAAGAACT
GGCTAAAATTGCACGGCAGCAGGGAATGAACACGCTGTTCGTTGAAGGACTGCATTGCGTTAATCGCGGAGAAACAACGC
TGGAGGAGCTAACGCGCGTAGCCGGAGGCAGCGATGGGTGA

Protein sequence : 
MTPATQRAVEAICLAHQAIIVEFNAQRLHIAVAETPSHTLMAELRFAAHCPIEVECWPQARLEQFHQRKELPALAAAEGA
PEYNGTAVEIINALLVQALQKRASDIHIEPQESSLRLRLRVDGVLQQLPLAGVESSTPLIARLKILASLDISERRVPQDG
QFSLLLNGNTESFRLSTLPTRFGEKAVVRLMQSDSHAIALENLGMPGSLLKRYREALARPQGMILVTGPTGSGKTFTLYS
GLSWLNIATRNLCSVEDPVEIPMLGVNQTQIHAKSGLDFHRVLRALLRQDPDVIMIGEIRDAETAEIAIKAAQTGHLVLS
TLHTNSTTETLVRLGQMGVPGYLLASALKLVIAQRLVRKLCPHCRQPATAVSHFPPHIWPGTVQNWLAVGCERCFSGFYG
RLPLFELLPISARLQNALAKSAQPEELAKIARQQGMNTLFVEGLHCVNRGETTLEELTRVAGGSDG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspE YP_854406.1 type II secretion protein GspE Not tested PAI I APEC-O1 Protein 3e-73 46
gspE CAE85233.1 GspE, hypothetical type II secretion protein Not tested PAI V 536 Protein 2e-73 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hofB YP_002647808.1 hypothetical protein VFG2426 Protein 8e-75 47
hofB YP_002647808.1 hypothetical protein VFG2048 Protein 8e-75 47
hofB YP_002647808.1 hypothetical protein VFG1876 Protein 1e-70 44
hofB YP_002647808.1 hypothetical protein VFG0182 Protein 2e-67 44