Gene Information

Name : dnaB (EpC_33140)
Accession : YP_002650295.1
Strain : Erwinia pyrifoliae Ep1/96
Genome accession: NC_012214
Putative virulence/resistance : Unknown
Product : Replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : 3.6.1.-
Position : 3626539 - 3627954 bp
Length : 1416 bp
Strand : -
Note : silverDB:cEP03315

DNA sequence :
ATGGCAGGAAATAAACCCACCAACAAATCCTACGAAAACCGCGAGCCGCGTGACCGTCAGATGGAAGGTCTCAAGCTGCC
ACCGCATTCGCTGGAAGCAGAACAGTCGGTGTTGGGCGGTTTAATGCTGGATAACGAACGCTGGGATAACGTCTCGGAGC
GCGTAGTGGCGAAGGACTTCTTCAGCCGCCCGCACCGGATGATCTTTGCGGAAATGCAGCGCCTGCTGGAACAGAGTAAG
CCGATCGACCTGATCACCCTGTCCGAATCGATGGAAACCAAAGGCGAACTGAGCATGGTTGGCGGTTTCGCCTACCTGGC
CGAGTTATCAAAAAATACGCCAAGCGCGGCTAACATCGGCGCTTATGCGGATATCGTGCGTGAACGTGCGGTCGTGCGTG
AGATGATCGCCGTAGCAAACGAGATCGCCGATGCCGGCTACGATCCGCAGGGGCGCAGCAGCGAAGATCTGCTCGATCTT
GCTGAATCGCGCGTATTCCAGATTGCTGAAAACCGCGCTAATAAAGATGAAGGGCCGAAAAGCGTCGATCAGATCCTCGA
AGCCACTATCGCGCGTATCGAATCGCTGTATCAGACGCCGCACGACGGCGTTACCGGGGTGGATACCGGCTATGGGGATT
TGAATAAGAAAACCGCTGGTCTGCAGCGTTCGGATCTGATTATCGTCGCCGCCCGCCCGTCGATGGGGAAAACCACCTTC
GCCATGAACCTGTGCGAAAACGCGGCGATGTTGCAGCAAAAACCGGTGCTAATTTTCAGCCTTGAGATGCCCGGCGAGCA
GCTGATGATGCGTATGCTGGCATCGCTGTCACGCGTTGACCAGACCCGCATCCGTACCGGCCAGCTTGACGATGAGGACT
GGGCGCGTATCTCCAGCACCATGGGTATTCTGCTGGAGAAGAAGAACATGTTTATCGATGACTCTTCCGGCCTGACGCCG
ACCGATGTGCGTTCGCGCGCGCGCCGCATTTTCCGTGAACACGGTGGGCTGAGCCTGATAATGATCGACTACCTGCAGCT
GATGCGCGTTCCTGCTCTGTCTGATAACCGTACGCTGGAAATCGCCGAGATCTCGCGCTCGCTGAAAGCGCTGGCCAAAG
AGCTACAGGTGCCGGTGGTGGCGCTGTCGCAGCTTAACCGCTCGCTGGAACAACGTGCCGATAAGCGCCCGGTCAACTCC
GACCTGCGTGAGTCCGGCTCCATCGAGCAGGATGCTGACCTAATCATGTTTATCTATCGTGATGAGGTTTACCACGAGAA
CAGCGATTTGAAAGGCGTGGCGGAGATCATCCTCGGTAAGCAGCGTAACGGCCCAATCGGCACCGTGCGCCTGACTTTCA
ACGGCCAGCATTCGCGCTTTGATAATTACGCCGGGCCACAGTACGACGACGAATAA

Protein sequence :
MAGNKPTNKSYENREPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVVAKDFFSRPHRMIFAEMQRLLEQSK
PIDLITLSESMETKGELSMVGGFAYLAELSKNTPSAANIGAYADIVRERAVVREMIAVANEIADAGYDPQGRSSEDLLDL
AESRVFQIAENRANKDEGPKSVDQILEATIARIESLYQTPHDGVTGVDTGYGDLNKKTAGLQRSDLIIVAARPSMGKTTF
AMNLCENAAMLQQKPVLIFSLEMPGEQLMMRMLASLSRVDQTRIRTGQLDDEDWARISSTMGILLEKKNMFIDDSSGLTP
TDVRSRARRIFREHGGLSLIMIDYLQLMRVPALSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNS
DLRESGSIEQDADLIMFIYRDEVYHENSDLKGVAEIILGKQRNGPIGTVRLTFNGQHSRFDNYAGPQYDDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 3e-94 54
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 4e-100 53
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 1e-100 53
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 7e-100 53
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 7e-87 50
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 7e-87 50
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 6e-98 49
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 2e-82 47
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 2e-74 44