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Name : lysS (EpC_29250) Accession : YP_002649906.1 Strain : Erwinia pyrifoliae Ep1/96 Genome accession: NC_012214 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 3224422 - 3225942 bp Length : 1521 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCTGAACAACAACCGCAGGCCGCTGACGCCGCACTTGAGCTGAACAACGAACTGAAAGCACGGCGCGAAAAGCTGGT GGCACTGCGCGAAACCGGCGTGGCGTTCCCGAACGATTTCCGCCGTGACCGCACATCTGACCAGCTGCACGCCGAATTTG ACGGCAAAGAGAACGATGAGCTGGAAGCGCTGGGCATTGAGGTCAGCGTTGCGGGCCGTATGATGACGCGTCGTATCATG GGCAAAGCCTCTTTCGTCACCCTGCAGGATGTCGGTGGCCGTATTCAGCTGTACGTGTCCCGGGACGATCTGGCGGATGG CATCTACAACGAACAGTTCAAAAAATGGGATCTCGGCGATATCCTCGGCGCGCGCGGCAAGTTGTTCAAGACCAAAACTG GCGAGCTGTCGATCCACTGCAGCGAACTGCGTCTGCTGACCAAAGCTCTTCGCCCGTTACCGGACAAGTTCCACGGCCTG GCCGATCAGGAAACCCGTTATCGTCAGCGTTACCTTGATCTGATCGCCAACGACGATTCACGTAAAACCTTTAAGATCCG CTCACAGATCATGGCCGGTATCCGCAACTTTATGGTCGGCCGTGACTTTATGGAAGTGGAAACCCCGATGATGCAGGCGA TCCCTGGCGGCGCTTCTGCCCGGCCGTTTATCACTCACCACAATGCGCTGGATCTTGATATGTATCTGCGTATTGCCCCG GAGCTGTATCTGAAGCGTCTGGTGGTGGGTGGCTTCGACCGCGTGTTTGAAATCAACCGTAACTTCCGTAACGAAGGGAT TTCGCCGCGCCATAACCCAGAGTTCACCATGATGGAACTCTATATGGCGTATGCCGACTACAAAGACCTGATTGAACTGA CCGAAAGCCTGTTCCGTACGCTGGCGCAGGACGTGCTGGGCAGCACCGTGGTGCCTTACGGCGACCAGCAGTTCGACTTC GGTAAGCCTTTCGCACAACTGACGATGAAAGAAGCGATACTGAAATATCGTCCGCAGACCGATCTGGCCGATCTTGCTGA CTTCGAAAAATCAGTCGCCATCGCCCAGTCTCTGGGGATTAACGTTGAGAAGAGCTGGGGGCTGGGCCGTCTGGTGACCG AGATCTTCGAAGAAACGGCGGAAGCGCATCTGATCCAGCCGACCTTTATTACCGAATACCCGGCTGAAGTCTCCCCGCTG GCGCGTCGTAACGATGTCGATCCGGAAATTACCGATCGTTTTGAGTTCTTTATCGGCGGCCGTGAAATCGGCAACGGCTT CTCGGAGCTGAACGATGCACAAGACCAGGCAGAACGTTTCCTGCAGCAGGTGAATGCCAAAGACGCGGGTGACGACGAAG CGATGTTCTACGACGAAGATTACGTTACCGCGCTGGAGCACGGCCTGCCGCCAACCGCCGGTCTGGGCGTTGGCATTGAC CGTATGGTCATGCTGTTTACCAACAGCCATACCATTCGCGACGTGATCCTGTTCCCGGCGCTGCGTCCAGGCAGCAAGTA A Protein sequence : MSEQQPQAADAALELNNELKARREKLVALRETGVAFPNDFRRDRTSDQLHAEFDGKENDELEALGIEVSVAGRMMTRRIM GKASFVTLQDVGGRIQLYVSRDDLADGIYNEQFKKWDLGDILGARGKLFKTKTGELSIHCSELRLLTKALRPLPDKFHGL ADQETRYRQRYLDLIANDDSRKTFKIRSQIMAGIRNFMVGRDFMEVETPMMQAIPGGASARPFITHHNALDLDMYLRIAP ELYLKRLVVGGFDRVFEINRNFRNEGISPRHNPEFTMMELYMAYADYKDLIELTESLFRTLAQDVLGSTVVPYGDQQFDF GKPFAQLTMKEAILKYRPQTDLADLADFEKSVAIAQSLGINVEKSWGLGRLVTEIFEETAEAHLIQPTFITEYPAEVSPL ARRNDVDPEITDRFEFFIGGREIGNGFSELNDAQDQAERFLQQVNAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGVGID RMVMLFTNSHTIRDVILFPALRPGSK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 5e-169 | 69 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002649906.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-169 | 69 |
