Gene Information

Name : EpC_28030 (EpC_28030)
Accession : YP_002649784.1
Strain : Erwinia pyrifoliae Ep1/96
Genome accession: NC_012214
Putative virulence/resistance : Unknown
Product : transposase, fragment
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 3073390 - 3074199 bp
Length : 810 bp
Strand : +
Note : silverDB:cEP02804

DNA sequence :
ATGACGATGTGTCGGGTACTTCATGTCGCCCGGGCCGGGTTCTATGCGTGGCTGCACAACCCGGTCTCGGCGCGTGATAA
AGATAACCAGCGTCTGCTGACGCTTATCCGTGACTCATATTCACTGAGCGGAGGCGTATACGGTTACCGGCGGGTTCATG
GCGACCTGAACGAAATCGGGGAAACCTGCGGTAAAAACCGGGTGGGCCGTATTATGCAACTGAACCGGATTAAAGCCGTG
CGCGGCTATAAAGCTCCGCGTCGTATTGCTGGCAGACCTTCAGTGGTTGCCCCTAATCGCGTGCAGCGGCAGTTTACTGT
TGTCCGGGCCAATCAGGTCTGGGTGACCGATATCACCTACATCCGCACCTGGCAGGGCTGGTTGTATCTGGCGGTGGTTA
TCGACCTCTTTGCCCGTAACGTGGTGGGGTGGTCGATGAAGCCCACCCTCTCACGCGAACTGGCACTGGATGCGCTCATG
ATGGCGGTCTGGCGACGAAAACCGGACGGCGAGGTGATTGTGCATAGCGATCAGGGCAGCCAGTACGGCAGCGACGACTG
GCAACGGTTTTGCCGGGCCAATAACCTGGTCCCGAGTATGAGCCGGCGTGGTAACTGCTGGGATAATGCCGTGGCCGAAT
CGTTCTTCAGTTCACTGAAAAAAGAACGGATCAGAAAGCGGATGTATAAAACACGGGATCTGGCCCGCGCGGATATCTTC
GATTACATTGAAGTGTTCTACAACCGGGCCCGGCGTCACAGCCATCTCGGTGGCGTCAGCCCGGAGGCCTTTGAACAGGC
CTCGTCGTGA

Protein sequence :
MTMCRVLHVARAGFYAWLHNPVSARDKDNQRLLTLIRDSYSLSGGVYGYRRVHGDLNEIGETCGKNRVGRIMQLNRIKAV
RGYKAPRRIAGRPSVVAPNRVQRQFTVVRANQVWVTDITYIRTWQGWLYLAVVIDLFARNVVGWSMKPTLSRELALDALM
MAVWRRKPDGEVIVHSDQGSQYGSDDWQRFCRANNLVPSMSRRGNCWDNAVAESFFSSLKKERIRKRMYKTRDLARADIF
DYIEVFYNRARRHSHLGGVSPEAFEQASS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpB CAB61574.1 transposase B Not tested HPI Protein 5e-40 46
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 4e-40 46
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 4e-41 44
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 2e-42 44
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 2e-40 44
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 4e-41 44
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 7e-44 43
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 7e-44 43
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 7e-44 43
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 4e-30 42
unnamed CAI43898.1 putative transposase Not tested LEE Protein 4e-30 42
unnamed AAC31485.1 L0006 Not tested LEE Protein 1e-29 42
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 1e-29 42
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 4e-45 41
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 4e-45 41
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 4e-30 41
Z5089 NP_290241.1 transposase Not tested LEE Protein 6e-30 41
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 4e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EpC_28030 YP_002649784.1 transposase, fragment VFG1631 Protein 1e-42 44
EpC_28030 YP_002649784.1 transposase, fragment VFG0785 Protein 2e-30 41