Gene Information

Name : sitD (EpC_14770)
Accession : YP_002648489.1
Strain : Erwinia pyrifoliae Ep1/96
Genome accession: NC_012214
Putative virulence/resistance : Virulence
Product : Iron transport protein, inner membrane component SitD
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1690106 - 1690942 bp
Length : 837 bp
Strand : -
Note : silverDB:cEP01478

DNA sequence : 
ATGAGCCTGACAGAACTGCTGCTTAGCCCGTTTCAGTTTGACTTTATGAATACGGCACTGGCCATATCGGTGATTGTCGC
TATCCCCTGCGCCCTGCTCTCCAGCTTCATGGTGATCAAAGGCTGGTCGCTGATGGGCGATGCCATGAGCCATGCGGTGT
TTCCCGGCGTGGTGGTGGCCTGGATACTCGGCATCCCTCTGGCTGTCGGCGCGTTTTGTGCCGGGCTGTTCTGCGCAATG
GCGACTGGCTTCGTGACGGAGAACAGCCGCATTAAACAGGATACCGTGATGGGCATTATCTTTTCCGGGATGTTCGCCGC
TGGTCTGATCCTCTATATCTCGGTGAAATCCGAGGTGCATCTCGACCACATCCTGTTCGGCGATATGTTAGGTATTTCCC
CCAGCGATATGCTGCAAAGCGCAGCCATTGCCGGCGTTATCGCTGCTATCATTGGCATTAAATGGCGCGATTTGGTGCTG
CATGCTTTTGATGCGCAGCAGGCGAAAGCATGCGGGCTGAACACAACGCTACTGCACTATGGCCTGCTGAGCATGATCGC
ACTGACCATCGTCGCCACGCTGAAAGCAGTGGGGATCGTGTTGTCAATTGCGCTGCTCATTGCCCCGGGGGCCATTGCCA
TTCTGCTTATGCGCACTTTCTCATCGGTGATGATCTGTGCGTTGCTGTTGGCAATCGCGGTCTGCTTTAGCGGCACGTAC
CTGTCATTCTTCCTCGACAGTGCTCCCGGTCCCACCATCGTGGTGCTGTTCGCTCTGCTGTTTGTCATGGCGTTTATTTA
TTCTCTGCGCCGCGAGCGCAAGATACTTTTGACCTGA

Protein sequence : 
MSLTELLLSPFQFDFMNTALAISVIVAIPCALLSSFMVIKGWSLMGDAMSHAVFPGVVVAWILGIPLAVGAFCAGLFCAM
ATGFVTENSRIKQDTVMGIIFSGMFAAGLILYISVKSEVHLDHILFGDMLGISPSDMLQSAAIAGVIAAIIGIKWRDLVL
HAFDAQQAKACGLNTTLLHYGLLSMIALTIVATLKAVGIVLSIALLIAPGAIAILLMRTFSSVMICALLLAIAVCFSGTY
LSFFLDSAPGPTIVVLFALLFVMAFIYSLRRERKILLT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-82 73
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-82 73
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-82 72
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-82 72
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-82 72

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_002648489.1 Iron transport protein, inner membrane component SitD BAC0352 Protein 1e-82 73
sitD YP_002648489.1 Iron transport protein, inner membrane component SitD BAC0442 Protein 2e-56 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_002648489.1 Iron transport protein, inner membrane component SitD VFG0528 Protein 1e-82 73