Gene Information

Name : EpC_11780 (EpC_11780)
Accession : YP_002648203.1
Strain : Erwinia pyrifoliae Ep1/96
Genome accession: NC_012214
Putative virulence/resistance : Unknown
Product : transposase, orf A
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1369448 - 1370302 bp
Length : 855 bp
Strand : -
Note : silverDB:cEP01179

DNA sequence :
ATGAAGTATGTCTTTATCGAAAAAAATCGGGCTGAGTTCAGTATCAAGGCCATGTGTCGTGTGCTTAGAATTGCCCGAAG
CGGCTGGTATGTCTGGTGCCTGCGTCGCCATCAAATCAGCCCGCGCCAGCAGTTCCGCCTCATCTGCGATAAGGCCGTCG
GTAAGGCATTTACTGAGGCAAAACAGCGTTATGGCGCACCTCGTCTTGCTGACGAGCTGCCGGAGTACAACATCAAAACC
ATTGCCGCCAGCCTGCGACGTCAGGGGCTGCGGGCGAAAGCGGCCCGCAAGTTCAGTCCGGTCAGTTATCGTGAACACGG
CCTGCCCGTGTCAGAGAACCTGCTGAAACAGGATTTTTACGCCAGCGGCGCAAACCAGAAGTGGGCAGGTGACATCACCT
ACTTACGTACAGATGAGGGCTGGCTGTATCTGGCGGTGGTCATTGACCTGTGGTCGCGTTCCGTCATTGGCTGGTCGATG
TCGCCGCGTATGACCGCACAACTGGCCTGCGACGCACTGCAGATGGCGTTGTGGCGGCGAAAACGTCCTGAAAAAGTGAT
TGTTCACACTGACCGTGGTGGGCAGTACTGTTCATCGGATTATCAGAGCTTGCTGAAATGTCATAATCTGCGCGGGAGCA
TGAGCGCAAAAGGCTGCTGTTATGACAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAGGTGGAATGTATCCACGGA
GAACGCTTTGCCAGCCGGGAAATAATGCGGACAACGGTGTTTAATTATATCGAGTGTGATTACAATCGGTGGCGTCGTCA
CAGTGCCTGTGGCGGCCTTAGTCCTGAACAATTTGAAAACCAGAACCTCGCTTAG

Protein sequence :
MKYVFIEKNRAEFSIKAMCRVLRIARSGWYVWCLRRHQISPRQQFRLICDKAVGKAFTEAKQRYGAPRLADELPEYNIKT
IAASLRRQGLRAKAARKFSPVSYREHGLPVSENLLKQDFYASGANQKWAGDITYLRTDEGWLYLAVVIDLWSRSVIGWSM
SPRMTAQLACDALQMALWRRKRPEKVIVHTDRGGQYCSSDYQSLLKCHNLRGSMSAKGCCYDNACVESFFHSLKVECIHG
ERFASREIMRTTVFNYIECDYNRWRRHSACGGLSPEQFENQNLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 9e-120 90
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 1e-115 86
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 1e-114 86
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 3e-115 86
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 1e-42 42
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 7e-43 42
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 9e-43 42
unnamed AAF09030.1 unknown Not tested SHI-O Protein 6e-43 42
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 9e-43 42
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 6e-43 42
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 9e-43 42
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 6e-43 42
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 3e-42 41
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 3e-42 41
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 3e-42 41
unnamed AAF09022.1 unknown Not tested SHI-O Protein 3e-43 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EpC_11780 YP_002648203.1 transposase, orf A VFG1631 Protein 5e-120 90
EpC_11780 YP_002648203.1 transposase, orf A VFG1706 Protein 4e-43 42