Gene Information

Name : SPC_4619 (SPC_4619)
Accession : YP_002640109.1
Strain : Salmonella enterica RKS4594
Genome accession: NC_012125
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 4722575 - 4723822 bp
Length : 1248 bp
Strand : +
Note : -

DNA sequence :
ATGGCCCTTACCGATATCAAAGTTAGGACTACTAAGCCTTCCGACAAACCCTTCAAACTTACAGATGGGCAGGGTATGCA
CCTGCTGATCAACCCCAATGGTTCAAAATACTGGCGACTCCAATACCGTTTCGGGGGCAAGCAGAAAGTTTTAGCATTGG
GTGTTTATCCAATGGTCTCTCTTGGTGAAGCCCGCAGGAAGCGAGATGAAGCCAAAAAGCTGGTATCTGATGGTATCGAC
CCTTCTGAGAAGAAAAAAGCAGATAAGATTGAGCAAAGCGAAGCCCTGACATTCGAAGCTGTTGCGAGAGACTGGCATAC
TGCCTGTAAAAGGAAATGGTCAGATTTCCATAGTGAAAGGGTTTTAAAGAGCCTTGAAGACAACCTTTTCTCTTCCATAG
GACAGAGAAAAATAGCCGAGCTTAAAACTAAGGATCTTCTCGATCCAGTCAAAACTGTTGCGGCTTCTGGACGACTAGAA
GTAGCTGCACGTCTGCAACAACGAACCACAGTAATAATGCGATATGCCGTCCAGAATGGCTTAATTGATTATAATCCAGC
ACAAGAGATGTCTGGAGCAATTGCTGTTGCGAAACGAACCCACAGGCCAGCATTACCATTTGATAGGTTCTCAGAGCTTT
TAGAGCGCATCGAGAGTTTTAAAGGTAGGAAACTTACTAAATTAGCTGTGAAGCTGACATTGCTCATTTTTATCCGTTCC
AGTGAACTCCGATTCGCAAGATGGTCGGAGATCGACTTTGTAAATGCGATGTGGACTATCCCAGGAGAACGCGAGCCATT
ACCAGGGGTCAAACATTCCCATCGAGGCTCAAAAATGAAGACTCCACACCTCGTGCCGTTAAGTCGTCAGGCTTTAGAAC
TTCTAAAAGCCATCAGAGAAATCAGTGGGGAATGCGACCTTGTATTCATTGGCGATCATGATTTCAGAAAACCTATGAGC
GAGAACACAGTGAACAAGGCACTAAGGTCGATGGGGTATGACACAACCGTTGAGGTATGTGGGCATGGGTTCAGGGCGAT
GGCTTGTAGTGCCTTAATCGAATCAGGAAAATGGTCAAGGGATGCTGTTGAACGGCAGATGAGCCACCAAGAGCGAAACT
CCGTTCGTGCTGCCTACATTCATAAAGCAGAACACCTCGATGAGAGAAAGCTTATGTTGCAGTGGTGGGCTGATTATCTT
GATGAAACAACTAAGAGAAGAATTGCACCTTTTGATTTTGATAAATAA

Protein sequence :
MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWRLQYRFGGKQKVLALGVYPMVSLGEARRKRDEAKKLVSDGID
PSEKKKADKIEQSEALTFEAVARDWHTACKRKWSDFHSERVLKSLEDNLFSSIGQRKIAELKTKDLLDPVKTVAASGRLE
VAARLQQRTTVIMRYAVQNGLIDYNPAQEMSGAIAVAKRTHRPALPFDRFSELLERIESFKGRKLTKLAVKLTLLIFIRS
SELRFARWSEIDFVNAMWTIPGEREPLPGVKHSHRGSKMKTPHLVPLSRQALELLKAIREISGECDLVFIGDHDFRKPMS
ENTVNKALRSMGYDTTVEVCGHGFRAMACSALIESGKWSRDAVERQMSHQERNSVRAAYIHKAEHLDERKLMLQWWADYL
DETTKRRIAPFDFDK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 7e-139 72
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-136 67
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 4e-136 67
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 5e-136 67
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 4e-136 67
int AAL51003.1 CP4-like integrase Not tested LEE Protein 4e-135 67
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 3e-135 67
int AAK16198.1 Int Not tested PAI-I AL862 Protein 4e-136 67
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 8e-134 66
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 8e-136 66
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 8e-136 66
int AAK00456.1 Int Not tested SHI-1 Protein 3e-126 66
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 3e-134 66
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 5e-135 66
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 9e-136 66
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 1e-135 66
int AAL51028.1 CP4-like integrase Not tested LEE Protein 9e-136 66
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 1e-135 66
int-phe AAL60261.1 Int-phe Not tested LEE Protein 9e-136 66
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 5e-136 66
int CAC81896.1 integrase Not tested LEE II Protein 4e-126 66
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 8e-133 65
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 3e-125 62
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 3e-125 62
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-112 57
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 7e-74 54
int CAB59974.1 integrase Not tested HPI Protein 3e-105 54
int CAA08754.1 integrase Not tested HPI Protein 2e-105 54
int YP_002346908.1 integrase Not tested HPI Protein 8e-105 53
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 8e-105 53
int2 NP_993013.1 integrase Not tested HPI Protein 8e-105 53
int CAA21384.1 - Not tested HPI Protein 8e-105 53
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 2e-86 53
unnamed AAD17660.1 unknown Not tested HPI Protein 3e-102 52
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 1e-107 52
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 1e-107 52
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 6e-97 50
int AAD44730.1 Int Not tested SHI-2 Protein 2e-80 45
aec33 AAW51716.1 Int Not tested AGI-3 Protein 3e-81 44
int CAC39282.1 integrase Not tested LPA Protein 2e-81 44
int AAC31482.1 CP4-like integrase Not tested LEE Protein 4e-79 43
int ACU09430.1 integrase Not tested LEE Protein 4e-79 43
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 6e-79 43
ECs4534 NP_312561.1 integrase Not tested LEE Protein 6e-79 43
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 5e-79 43
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 6e-79 43
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 6e-79 43
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 3e-70 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SPC_4619 YP_002640109.1 integrase VFG1536 Protein 4e-139 72
SPC_4619 YP_002640109.1 integrase VFG0626 Protein 4e-136 66
SPC_4619 YP_002640109.1 integrase VFG1693 Protein 1e-134 66
SPC_4619 YP_002640109.1 integrase VFG0783 Protein 2e-79 43
SPC_4619 YP_002640109.1 integrase VFG0598 Protein 3e-79 43